Possibilities:
1. Your power supply feeding the RPi is inadequate. Recommend it
be at least 2.5 amps at 5V.
2. The USB cable may be only spec'ed at 0.5 amp, which is the USB standard.
3. I suggest an error somewhere in the chain that led you to read the RPi 3 only drawing less than half an amp.
Hanging and the red square are classic signs the RPi is not getting enough power.
Hope this helps,
David
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I also tested pull-up for CS0 pin, short CS to reset the module & short MISO while testing the raspberry_video.
https://groups.google.com/forum/#!topic/flir-lepton/qnS8OjmFo6I
https://groups.google.com/forum/m/#!topic/flir-lepton/-Xr1Dfgdcfs
Not necessarily shorter, but definitely thicker.
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It does not support RPI 3 Model B.