Dear Alex,
It seems that PA takes it data
exclusively from the FLEx lexicon and not from the wordlist, which
is fed from the texts. And each lexicon entry needs to have a
lexeme form, because these are needed for grammatical analysis. If
you don't want to do any grammatical analysis with your database,
but just want to use it as a source for PA, then you can cheat a
little bit by changing the lexeme form to the citation form while
you are adding it (and then let PA get its data from the
lexeme-form field again). FLEx will then automatically turn the
stem into an allomorph of the entry. But since you already did
some grammatical analysis (as you have already entered all the
affixes and bound roots) I wouldn't recommend doing that.
It is also important to understand the
nature of the citation-form field. Normally you should not be able
to copy-paste the word directly from the text into the
citation-form field, as the word in the text rarely matches the
citation-form criteria - each verb in the lexicon should always be
entered in exactly the same grammatical form into the citation
form, be it the infinitive (as in English), 1s.prs as in Latin, or
3.masc.pst as in Amharic. Each language comes with its own
citation forms, which need to be carefully chosen. This means that
for almost any word you'll need to enter the citation form field
by hand in any case. Maybe for nouns there is less variation, but
only in languages that only show number on the noun, but not case.
I hope that helps a little bit - short
answer is, yes, you will have to enter the citation form by hand
in the Lexicon area of FLEx, even if it takes time.
Best wishes,
Andreas