Result

[aq teha]

Hello Sir, I have run my data by using flashpcaR. The result is as  shown in the picture. 

In your documentation, it says that I will get this output. 

• values: eigenvalues
• vectors: eigenvectors
• projection: projection of sample onto eigenvectors (X V)
• loadings: SNP loadings, if using a linear kernel

So the questions are : 

1. Did I will only get that output ? Because i cannot find any .txt produced after this analysis. 
2. Did I should get this output (eigenvectors.txt, pcs.txt, eigenvalues.txt,pve.txt) ?
3. Does this 

is stands for eigen values? 

Thank you. 

[Gad Abraham]

"flashpcaR" is an R package but "flashpca" is a commandline tool. I can't tell which you have run but you need to read the relevant documentation for each tool.

[aq teha]

I run the data using this code. Before that i used read_plink("data",impte="random"). 

Then i get the result as shown before. But I dont know how to interpret the result. Will you help me. Im new in analysis data.   

 

[Gad Abraham]

Then r$vectors are the eigenvectors, and r$values are the eigenvalues. Please look at help via ?flashpca.

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