Hello all!
Hope all has been going well.
Just wanted to inform everyone that we recently published a Nature
Protocols paper describing the process of using FitHiC2 to analyze a
variety of representative sample cases.
The
paper formalizes and describes the latest version of FitHiC and also
walks through some common analysis steps that I think everyone would
find useful. In addition, we describe some new utilities and a novel
merging filter script to help eliminate indirect interactions happening
around direct contacts. You can find the paper
here.
Thank you all for using FitHiC and I hope your 2020 is filled to the brim with wonderful analysis!
Best,
Arya
--
Harvard Medical School PhD Candidate Bioinformatics and Genomics
UC San Diego B.S. Bioinformatics 2019