Problem in install FitHic - Windows - python 3.7

[ahmed ib]

I use anaconda prompt  with all steps 

but gives me error message Output in format: Requested package -> Available versions 

1- conda config --add channels defaults

conda config --add channels conda-forge
conda config --add channels bioconda

2-conda install fithic

[Kaul, Arya]

Hey Ahmed,

I think the issue is a conflict with an existing package. Could you try to create a separate clean Python3 environment using `conda env`, and try installing fithic to that?

Best,

Arya

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Arya Kaul

Harvard Medical School PhD Candidate Bioinformatics and Genomics

UC San Diego B.S. Bioinformatics 2019

[ahmed ib]

Thanks Arya for your replying 

it works with pip but anaconda until now the same error message 

On Friday, May 1, 2020 at 8:13:23 PM UTC+2, Kaul, Arya wrote:

Hey Ahmed,

I think the issue is a conflict with an existing package. Could you try to create a separate clean Python3 environment using `conda env`, and try installing fithic to that?

Best,

Arya

On Wed, Apr 29, 2020 at 9:33 AM ahmed ib <phahm...@gmail.com> wrote:

I use anaconda prompt  with all steps 

but gives me error message Output in format: Requested package -> Available versions 

1- conda config --add channels defaults

conda config --add channels conda-forge
conda config --add channels bioconda

2-conda install fithic

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[Kaul, Arya]

Hey Ahmed,

No problem! So making a new environment allowed the pip install to work?

Best,

Arya

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[Emel Kökrek]

Hey Arya,

I guess I have a similar problem.

OS: Ubuntu 18.04

 

I created a new conda environment with python 3.7

When I try to install fithic with "conda install", I receive an incompatibility message below and installation stops.

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions The following specifications were found to be incompatible with your CUDA driver:

  - feature:/linux-64::__cuda==10.2=0
  - feature:|@/linux-64::__cuda==10.2=0

Your installed CUDA driver is: 10.2

I will try to see where in the package or code you specify a cuda_toolkit version.

What do you think would be the solution here?

Thanks,

Emel

4 Mayıs 2020 Pazartesi tarihinde saat 18:00:52 UTC+3 itibarıyla arya...@g.harvard.edu şunları yazdı:

[Kaul, Arya]

Hey Emel,

Little odd as we don't use any CUDA code in FitHiC. Could 'pip install' and let us know if you have the same problem?

Best,

Arya

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[Emel Kökrek]

Yes yes, pip install works fine.

I prefer conda in almost all cases.
But conda gives the error above so just to inform you.

Best,
Emel

[Kaul, Arya]

Thanks for letting us know! I've found quite a bit of people reporting this same error, and am looking for a fix.

For the meantime, pip install should work as its internals are identical to the conda package.

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