Hi Maciej,
Unlike Google Analytics, Firebase Analytics offers one Global "tracker" that is explicitly defined in your configuration file (GoogleService-Info.plist). There are currently no plans to change this model.
That said, you might want to consider using a User Property to identify the source of traffic. For example, if you register a User Property named "bundle_id" and, in the app, you set a User Property named "bundle_id" to the value of the BundleID of the extension, you could then filter all of your reports by that user property to effectively measure each extensions separately.