some OSEHRA progress on RDF
18 views
Skip to first unread message
Tom Munnecke
Feb 14, 2012, 12:43:52 PM2/14/12
to fileman-triple-store
I thought this would interest you all... Catalin is from a Romanian company that is working with the Ray Group on the OSEHRA contract.
On Tue, Feb 14, 2012 at 1:02 AM, catalinb <catalin...@infoworld.ro> wrote:
We have an OWL/RDF file containing Packages, Routines and Globals in here: https://github.com/OSEHR/M-RoutineAnalyzer/blob/master/out/VistAOWL.zip
It has been loaded and validated with Protege 4.1, and I managed to get a HTML representation of it with the OWLDoc export plugin. To keep it small enough, the only verbs used are: contains, calls and reads_global. Anyway I think it provides a good starting point, we can improve later on when we will become more familiar with RDF and SparQL.
Any comments will be greatly appreciated,
Catalin
--
Full post: http://www.osehra.org/document/proposal-use-rdfsparql-define-foundation-...
Manage my subscriptions: http://www.osehra.org/og_mailinglist/subscriptions
Stop emails for this post: http://www.osehra.org/og_mailinglist/unsubscribe/439
glilly
Feb 14, 2012, 7:26:07 PM2/14/12
to Fileman Triple Store
Very Cool Tom!
I had to tweek the inport code a little, but I managed to load it into
our Fileman Triple Store: ( it has 273193 TRIPLES according to this)..
GTM>D FILEIN^C0XF2N
File Directory: /home/glilly/snomed/ Replace snomed/ With vistaowl/
Replace
/home/glilly/vistaowl/
File Name: qds.rdf// VistAOWL.owl
STARTED: 3120215.000709
READING IN: VistAOWL.owl
326945 LINES READ
ADDED: _:G288093545 _:S516038397 fmts:rdfSource
_TXT_INCOMING_RDF_FILE_/home/gli
lly/vistaowl/VistAOWL.owl_248014531
300068 XML NODES PARSED
PARSE COMPLETE AT 3120215.001051
ELAPSED TIME: 160 SECONDS
APPROXIMATELY 1875 NODES PER SECOND
INSERTING GRAPH: /home/glilly/vistaowl/VistAOWL.owl
VOCABS:C0XVOC=""
C0XVOC("mv")="http://metavista.name/foundation#"
C0XVOC("owl")="http://www.w3.org/2002/07/owl#"
C0XVOC("rdf")="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
C0XVOC("rdfs")="http://www.w3.org/2000/01/rdf-schema#"
C0XVOC("vista")="http://osehra.org/ns#"
INSERTING 273193 TRIPLES
USING BULKLOAD
LOCKING ZERO NODE
ZERO NODE UNLOCKED, IENS RESERVED=3195
3120215.002015
INSERTION COMPLETE AT 3120215.001051
ENDED AT: 3120215.002017
ELAPSED TIME: 788 SECONDS
APPROXIMATELY 346 TRIPLES PER SECOND
here's what it looks like in a simple Fileman Print:
C0X TRIPLE LIST FEB 15,2012 00:23
PAGE 1
SUBJECT PREDICATE OBJECT
--------------------------------------------------------------------------------
GRAPH: /home/glilly/vistaowl/VistAOWL.owl
mv:contains rdfs:comment Defines a routine
contained in a
Package
mv:contains rdfs:domain mv:Package
mv:contains rdfs:range mv:Routine
mv:contains rdfs:label contains
mv:calls rdfs:comment Defines a routine
called by another
routine
mv:calls rdfs:domain mv:Routine
mv:calls rdfs:range mv:Routine
mv:calls rdfs:label calls
mv:reads_global rdfs:comment A reference to
code
that directly
reads a
MUMPS Global
mv:reads_global rdfs:domain mv:Routine
mv:reads_global rdfs:range mv:Global
mv:reads_global rdfs:label reads_global
vista:A7R mv:contains vista:A7RUCH01
vista:A7R mv:contains vista:A7RXDRPT
vista:A7R rdfs:label NDBI
vista:A7R rdf:type mv:Package
vista:ABSV mv:contains vista:ABSV04
vista:ABSV mv:contains vista:ABSV88
vista:ABSV mv:contains vista:ABSV88A
vista:ABSV mv:contains vista:ABSV88B
vista:ABSV mv:contains vista:ABSVALPH
vista:ABSV mv:contains vista:ABSVBGMF
vista:ABSV mv:contains vista:ABSVCK
vista:ABSV mv:contains vista:ABSVCVT
On Feb 14, 12:43 pm, Tom Munnecke <munne...@gmail.com> wrote:
> I thought this would interest you all... Catalin is from a Romanian company
> that is working with the Ray Group on the OSEHRA contract.
>
I had to tweek the inport code a little, but I managed to load it into
our Fileman Triple Store: ( it has 273193 TRIPLES according to this)..
GTM>D FILEIN^C0XF2N
File Directory: /home/glilly/snomed/ Replace snomed/ With vistaowl/
Replace
/home/glilly/vistaowl/
File Name: qds.rdf// VistAOWL.owl
STARTED: 3120215.000709
READING IN: VistAOWL.owl
326945 LINES READ
ADDED: _:G288093545 _:S516038397 fmts:rdfSource
_TXT_INCOMING_RDF_FILE_/home/gli
lly/vistaowl/VistAOWL.owl_248014531
300068 XML NODES PARSED
PARSE COMPLETE AT 3120215.001051
ELAPSED TIME: 160 SECONDS
APPROXIMATELY 1875 NODES PER SECOND
INSERTING GRAPH: /home/glilly/vistaowl/VistAOWL.owl
VOCABS:C0XVOC=""
C0XVOC("mv")="http://metavista.name/foundation#"
C0XVOC("owl")="http://www.w3.org/2002/07/owl#"
C0XVOC("rdf")="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
C0XVOC("rdfs")="http://www.w3.org/2000/01/rdf-schema#"
C0XVOC("vista")="http://osehra.org/ns#"
INSERTING 273193 TRIPLES
USING BULKLOAD
LOCKING ZERO NODE
ZERO NODE UNLOCKED, IENS RESERVED=3195
3120215.002015
INSERTION COMPLETE AT 3120215.001051
ENDED AT: 3120215.002017
ELAPSED TIME: 788 SECONDS
APPROXIMATELY 346 TRIPLES PER SECOND
here's what it looks like in a simple Fileman Print:
C0X TRIPLE LIST FEB 15,2012 00:23
PAGE 1
SUBJECT PREDICATE OBJECT
--------------------------------------------------------------------------------
GRAPH: /home/glilly/vistaowl/VistAOWL.owl
mv:contains rdfs:comment Defines a routine
contained in a
Package
mv:contains rdfs:domain mv:Package
mv:contains rdfs:range mv:Routine
mv:contains rdfs:label contains
mv:calls rdfs:comment Defines a routine
called by another
routine
mv:calls rdfs:domain mv:Routine
mv:calls rdfs:range mv:Routine
mv:calls rdfs:label calls
mv:reads_global rdfs:comment A reference to
code
that directly
reads a
MUMPS Global
mv:reads_global rdfs:domain mv:Routine
mv:reads_global rdfs:range mv:Global
mv:reads_global rdfs:label reads_global
vista:A7R mv:contains vista:A7RUCH01
vista:A7R mv:contains vista:A7RXDRPT
vista:A7R rdfs:label NDBI
vista:A7R rdf:type mv:Package
vista:ABSV mv:contains vista:ABSV04
vista:ABSV mv:contains vista:ABSV88
vista:ABSV mv:contains vista:ABSV88A
vista:ABSV mv:contains vista:ABSV88B
vista:ABSV mv:contains vista:ABSVALPH
vista:ABSV mv:contains vista:ABSVBGMF
vista:ABSV mv:contains vista:ABSVCK
vista:ABSV mv:contains vista:ABSVCVT
On Feb 14, 12:43 pm, Tom Munnecke <munne...@gmail.com> wrote:
> I thought this would interest you all... Catalin is from a Romanian company
> that is working with the Ray Group on the OSEHRA contract.
>
> On Tue, Feb 14, 2012 at 1:02 AM, catalinb <catalin.bra...@infoworld.ro>wrote:
>
>
>
>
>
>
>
> > We have an OWL/RDF file containing Packages, Routines and Globals in here:
> >https://github.com/OSEHR/M-RoutineAnalyzer/blob/master/out/VistAOWL.zip
>
> > It has been loaded and validated with Protege 4.1, and I managed to get a
> > HTML representation of it with the OWLDoc export plugin. To keep it small
> > enough, the only verbs used are: contains, calls and reads_global. Anyway I
> > think it provides a good starting point, we can improve later on when we
> > will become more familiar with RDF and SparQL.
>
> > Any comments will be greatly appreciated,
>
> > Catalin
> > --
> > Full post:
> >http://www.osehra.org/document/proposal-use-rdfsparql-define-foundation-...<http://www.osehra.org/document/proposal-use-rdfsparql-define-foundati...>
>
>
>
>
>
>
>
> > We have an OWL/RDF file containing Packages, Routines and Globals in here:
> >https://github.com/OSEHR/M-RoutineAnalyzer/blob/master/out/VistAOWL.zip
>
> > It has been loaded and validated with Protege 4.1, and I managed to get a
> > HTML representation of it with the OWLDoc export plugin. To keep it small
> > enough, the only verbs used are: contains, calls and reads_global. Anyway I
> > think it provides a good starting point, we can improve later on when we
> > will become more familiar with RDF and SparQL.
>
> > Any comments will be greatly appreciated,
>
> > Catalin
> > --
> > Full post:
George Lilly
Feb 14, 2012, 7:32:54 PM2/14/12
to Fileman Triple Store
and we can do simple "triples" queries and get back JSON:
GTM>D triples^C0XGET1(.x,"vista:ABSV","mv:contains")
s:67140 p:67121 o:
d do1(.triprtn,zt,zi,nsub,npred)
GTM>ZWR x
x(0)="{""results"":[""vista:ABSV"":{""mv:contains"":""vista:ABSV04"",""mv:conta
i
ns"":""vista:ABSV88"",""mv:contains"":""vista:ABSV88A"",""mv:contains
"
":""vista:ABSV88B"",""mv:contains"":""vista:ABSVALPH"",""mv:contains"
"
:""vista:ABSVB"
x(1)="GMF"",""mv:contains"":""vista:ABSVCK"",""mv:contains"":""vista:ABSVCVT"",
"
"mv:contains"":""vista:ABSVDADD"",""mv:contains"":""vista:ABSVDDE"","
"
mv:contains"":""vista:ABSVDDLE"",""mv:contains"":""vista:ABSVDDLF"","
"
mv:contains"":"
x(2)="""vista:ABSVDEDI"",""mv:contains"":""vista:ABSVDENT"",""mv:contains"":""v
i
sta:ABSVDGPF"",""mv:contains"":""vista:ABSVDLE1"",""mv:contains"":""v
i
sta:ABSVDLE2"",""mv:contains"":""vista:ABSVDLE3"",""mv:contains"":""v
i
sta:ABSVDLET"
x(3)=""",""mv:contains"":""vista:ABSVDORG"",""mv:contains"":""vista:ABSVDPNT"",
"
"mv:contains"":""vista:ABSVDPRT"",""mv:contains"":""vista:ABSVDSIN"",
"
"mv:contains"":""vista:ABSVE"",""mv:contains"":""vista:ABSVE0"",""mv:
c
ontains"":""vis"
x(4)="ta:ABSVE1"",""mv:contains"":""vista:ABSVE2"",""mv:contains"":""vista:ABSV
E
3"",""mv:contains"":""vista:ABSVE4"",""mv:contains"":""vista:ABSVFIX"
"
,""mv:contains"":""vista:ABSVGGG1"",""mv:contains"":""vista:ABSVGGG2"
"
,""mv:contain"
x(5)="s"":""vista:ABSVGGG3"",""mv:contains"":""vista:ABSVIPST"",""mv:contains""
:
""vista:ABSVL"",""mv:contains"":""vista:ABSVL1"",""mv:contains"":""vi
s
ta:ABSVL2"",""mv:contains"":""vista:ABSVLBL"",""mv:contains"":""vista
:
x(6)=":contains"":""vista:ABSVLBL2"",""mv:contains"":""vista:ABSVLBL3"",""mv:co
n
tains"":""vista:ABSVLS"",""mv:contains"":""vista:ABSVLS1"",""mv:conta
i
ns"":""vista:ABSVM"",""mv:contains"":""vista:ABSVM1"",""mv:contains""
:
""vista:ABSVM"
x(7)="HV1"",""mv:contains"":""vista:ABSVMLC1"",""mv:contains"":""vista:ABSVMLC2
"
",""mv:contains"":""vista:ABSVMLC3"",""mv:contains"":""vista:ABSVMRV1
"
",""mv:contains"":""vista:ABSVMS1"",""mv:contains"":""vista:ABSVMT"",
"
"mv:contains"""
x(8)=":""vista:ABSVMUT1"",""mv:contains"":""vista:ABSVMVV1"",""mv:contains"":""
v
ista:ABSVMVV2"",""mv:contains"":""vista:ABSVMVV3"",""mv:contains"":""
v
ista:ABSVNIT1"",""mv:contains"":""vista:ABSVNIT2"",""mv:contains"":""
v
ista:ABSVNOM"
x(9)=""",""mv:contains"":""vista:ABSVOT"",""mv:contains"":""vista:ABSVOTE"",""m
v
:contains"":""vista:ABSVOTSD"",""mv:contains"":""vista:ABSVPPP1"",""m
v
:contains"":""vista:ABSVPPP2"",""mv:contains"":""vista:ABSVPPP3"",""m
v
:contains"":""v"
x(10)="ista:ABSVPPP4"",""mv:contains"":""vista:ABSVPPP5"",""mv:contains"":""vis
t
a:ABSVPST"",""mv:contains"":""vista:ABSVQ"",""mv:contains"":""vista:A
B
SVSCAN"",""mv:contains"":""vista:ABSVSER3"",""mv:contains"":""vista:A
B
SVSERV"",""mv:"
x(11)="contains"":""vista:ABSVSITE"",""mv:contains"":""vista:ABSVT"",""mv:conta
i
ns"":""vista:ABSVTC"",""mv:contains"":""vista:ABSVTC1"",""mv:contains
"
":""vista:ABSVTED"",""mv:contains"":""vista:ABSVTED1"",""mv:contains"
"
:""vista:ABSVT"
x(12)="ED2"",""mv:contains"":""vista:ABSVTED3"",""mv:contains"":""vista:ABSVTED
4
"",""mv:contains"":""vista:ABSVTED5"",""mv:contains"":""vista:ABSVTIM
E
"",""mv:contains"":""vista:ABSVTP"",""mv:contains"":""vista:ABSVTP1""
,
""mv:contains"""
x(13)=":""vista:ABSVTP2"",""mv:contains"":""vista:ABSVTPR"",""mv:contains"":""v
i
sta:ABSVTPR1"",""mv:contains"":""vista:ABSVTPR2"",""mv:contains"":""v
i
sta:ABSVU"",""mv:contains"":""vista:ABSVU1"",""mv:contains"":""vista:
A
BSVU2"",""mv:co"
x(14)="ntains"":""vista:ABSVU3"",""mv:contains"":""vista:ABSVVIEW"",""mv:contai
n
s"":""vista:ABSVYN""}]}"
GTM>
George Lilly
Feb 14, 2012, 7:55:25 PM2/14/12
to Fileman Triple Store
or a more interesting triples query for a routine:
GTM>D triples^C0XGET1(.x,"vista:PSOPOST")
s:85498 p: o:
d do2(.triprtn,zt,zi,nsub)
GTM>ZWR x
x(0)="{""results"":[""vista:PSOPOST"":{""mv:calls"":""vista:*DT"",""mv:calls"":
"
"vista:*DTC"",""mv:calls"":""vista:*ZTLOAD"",""mv:calls"":""vista:DIC
N
"",""mv:calls"":""vista:ORQOR2"",""mv:calls"":""vista:PSOHLSN1"",""mv
:
calls"":""vista:PS"
x(1)="OSIGNO"",""mv:calls"":""vista:PSOUTL"",""mv:calls"":""vista:XLFDT"",""mv:
c
alls"":""vista:XMD"",""mv:calls"":""vista:XPDMENU"",""mv:calls"":""vi
s
ta:XPDUTL"",""mv:reads_global"":""vista:.DD"",""mv:reads_global"":""v
i
sta:.DPT"",""mv:r"
x(2)="eads_global"":""vista:.OR"",""mv:reads_global"":""vista:.ORD"",""mv:reads
:
calls"":""vista:PS"
x(1)="OSIGNO"",""mv:calls"":""vista:PSOUTL"",""mv:calls"":""vista:XLFDT"",""mv:
c
alls"":""vista:XMD"",""mv:calls"":""vista:XPDMENU"",""mv:calls"":""vi
s
ta:XPDUTL"",""mv:reads_global"":""vista:.DD"",""mv:reads_global"":""v
i
sta:.DPT"",""mv:r"
x(2)="eads_global"":""vista:.OR"",""mv:reads_global"":""vista:.ORD"",""mv:reads
_
global"":""vista:.PS"",""mv:reads_global"":""vista:.PSDRUG"",""mv:rea
d
s_global"":""vista:.PSRX"",""mv:reads_global"":""vista:.VA"",""mv:rea
d
s_global"":"""
x(3)="vista:.XTMP"",""rdf:type"":""mv:Routine"",""rdfs:label"":""PSOPOST""}]}"
Tom Munnecke
Feb 14, 2012, 9:03:17 PM2/14/12
to fileman-tr...@googlegroups.com
hey George,
do you want to post this to the OSEHRA site, or shall I?
do you want to post this to the OSEHRA site, or shall I?
George Lilly
Feb 14, 2012, 9:07:17 PM2/14/12
to fileman-tr...@googlegroups.com
go ahead Tom... you're great at providing context.
gpl
Reply all
Reply to author
Forward
0 new messages