[Bug 606] New: LUT list in Log

[bugz...@fiji.sc]

Bug ID	606
Summary	LUT list in Log
Classification	Unclassified
Product	Fiji
Version	unspecified
Hardware	PC
OS	Windows
Status	NEW
Severity	normal
Priority	P4
Component	Plugins
Assignee	fiji-...@googlegroups.com
Reporter	olivier...@u-clermont1.fr
CC	olivier...@u-clermont1.fr

Hello
When I use the Image>Hyperstacks>temporal-color code, a list of LUT is printed
in the Log. The Log file is filled wery quickly.

Information about your version of Java:

  os.arch => x86
  os.name => Windows XP
  os.version => 5.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) Client VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to:
C:\DOCUME~1\olbardot\MESDOC~1\Labo\LOGICI~1\Fiji.app/java/win32/jdk1.6.0_24//jre
  ij.dir => C:\DOCUME~1\olbardot\MESDOC~1\Labo\LOGICI~1\Fiji.app

Information about the version of each plugin:

null

---

You are receiving this mail because:

• You are the assignee for the bug.

[bugz...@fiji.sc]

Johannes Schindelin changed bug 606

What	Removed	Added
Status	NEW	ASSIGNED
CC		johannes....@gmx.de

Comment # 1 on bug 606 from Johannes Schindelin

That plugin is actually a macro and by pressing the Shift key while clicking on
the menu item, you open the macro in the Script Editor instead of running it.

This should give you the opportunity to identify what needs to be changed.
(Yes, I am asking for your assistance here... Unfortunately, I have a lot on my
plate currently... but at least I hope to give you a chance to have your bug
fixed faster that way.)

[Olivier BARDOT]

• You are on the CC list for the bug.
• You reported the bug.

Hello

There is a hidden print (IJ.log) in the following script :

eval("script", "importClass(Packages.ij.IJ);\n"

+ "\n"

+ "result = [];\n"

+ "if (IJ.getInstance() != null) {\n"

+ " importClass(Packages.fiji.User_Plugins);\n"

+ " importClass(Packages.ij.Menus);\n"

+ "\n"

+ " commands = Menus.getCommands();\n"

+ " lutsMenu = User_Plugins.getMenu('Image>Lookup Tables');\n"

+ " if (lutsMenu != null) {\n"

+ " for (i = 0; i < lutsMenu.getItemCount(); i++) {\n"

+ " menuItem = lutsMenu.getItem(i);\n"

+ " if (menuItem.getActionListeners().length == 0) {\n"

+ " // is a separator\n"

+ " continue;\n"

+ " }\n"

+ " label = menuItem.getLabel();\n"

+ " if (label.equals('Invert LUT') || label.equals('Apply LUT')) {\n"

+ " // no lookup table\n"

+ " continue;\n"

+ " }\n"

+ " command = commands.get(label);\n"

+ " if (command == null || command.startsWith('ij.plugin.LutLoader')) {\n"

Here the label list is printed from this command.

+ " result.push(label);\n"

Label is an array that contains the liste of LUT.

+ " }\n"

+ " }\n"

+ " }\n"

+ "}\n"

+ "// ImageJ's eval('script', script) erroneously always returns null\n"

+ "System.setProperty('result', result.join('\\n'));\n");

return split(call("java.lang.System.getProperty", "result"), "\n");

Hope this helps.

--

Olivier BARDOT - olivier...@udamail.fr MCU
	GReD UMR CNRS 6293, INSERM U1103 Clermont Université GroMoE Growth and Morphogenesis of Epithelia http://www.gred-clermont.fr/  Université d'Auvergne Plateau Campus les Cézeaux - B.P. 86 - 63172 AUBIERE tél: +33 4 73 17 81 71 www.u-clermont1.fr - www.udapro.fr

[bugz...@fiji.sc]

Comment # 2 on bug 606 from Johannes Schindelin

The OP sent this via mail by mistake rather than adding a comment in the web
interface:

-- snipsnap --
Hello
There is a hidden print (IJ.log) in the following script :

eval("script", "importClass(Packages.ij.IJ);\n"
+ "\n"
+ "result = [];\n"
+ "if (IJ.getInstance() != null) {\n"
+ " importClass(Packages.fiji.User_Plugins);\n"
+ " importClass(Packages.ij.Menus);\n"
+ "\n"
+ " commands = Menus.getCommands();\n"
+ " lutsMenu = User_Plugins.getMenu('Image>Lookup Tables');\n"
+ " if (lutsMenu != null) {\n"
+ " for (i = 0; i < lutsMenu.getItemCount(); i++) {\n"
+ " menuItem = lutsMenu.getItem(i);\n"
+ " if (menuItem.getActionListeners().length == 0) {\n"
+ " // is a separator\n"
+ " continue;\n"
+ " }\n"
+ " label = menuItem.getLabel();\n"
+ " if (label.equals('Invert LUT') || label.equals('Apply LUT')) {\n"
+ " // no lookup table\n"
+ " continue;\n"
+ " }\n"
+ " command = commands.get(label);\n"
+ " if (command == null || command.startsWith('ij.plugin.LutLoader')) {\n"

Here the label list is printed from this command.

+ " result.push(label);\n"

Label is an array that contains the liste of LUT.

+ " }\n"
+ " }\n"
+ " }\n"
+ "}\n"
+ "// ImageJ's eval('script', script) erroneously always returns null\n"
+ "System.setProperty('result', result.join('\\n'));\n");
return split(call("java.lang.System.getProperty", "result"), "\n");
Hope this helps.

---

[bugz...@fiji.sc]

Comment # 3 on bug 606 from olivier bardot

Hello
There is a hidden print to the log in the following script : 
eval("script", "importClass(Packages.ij.IJ);\n"
+ "\n"
+ "result = [];\n"
+ "if (IJ.getInstance() != null) {\n"
+ " importClass(Packages.fiji.User_Plugins);\n"
+ " importClass(Packages.ij.Menus);\n"
+ "\n"
+ " commands = Menus.getCommands();\n"
+ " lutsMenu = User_Plugins.getMenu('Image>Lookup Tables');\n"
+ " if (lutsMenu != null) {\n"
+ " for (i = 0; i < lutsMenu.getItemCount(); i++) {\n"
+ " menuItem = lutsMenu.getItem(i);\n"
+ " if (menuItem.getActionListeners().length == 0) {\n"
+ " // is a separator\n"
+ " continue;\n"
+ " }\n"
+ " label = menuItem.getLabel();\n"
+ " if (label.equals('Invert LUT') || label.equals('Apply LUT')) {\n"
+ " // no lookup table\n" + " continue;\n" 
+ " }\n"
+ " command = commands.get(label);\n"
+ " if (command == null || command.startsWith('ij.plugin.LutLoader')) {\n" 

Here the label list is printed from this command. 
+ " result.push(label);\n" 
Label is an array that contains the liste of LUT. 
+ " }\n"
+ " }\n
 + " }\n"
+ "}\n" + "// ImageJ's eval('script', script) erroneously always returns
null\n" + "System.setProperty('result', result.join('\\n'));\n"); return
split(call("java.lang.System.getProperty", "result"), "\n");
Hope this helps.

---

[bugz...@fiji.sc]

Johannes Schindelin changed bug 606

What	Removed	Added
Status	ASSIGNED	RESOLVED
Resolution	---	WORKSFORME

Comment # 4 on bug 606 from Johannes Schindelin

Sorry, I do not see the 'print'. I also cannot reproduce the Log output. The
statement 'result.push(label)' does *not* output anything here. This is the
macro I recorded so you can see exactly what I tried to reproduce:

run("Mitosis (26MB, 5D stack)");
run("Reduce Dimensionality...", "  slices frames");
run("Temporal-Color Code", "lut=Fire start=1 end=51 create");

[bugz...@fiji.sc]

Comment # 5 on bug 606 from olivier bardot

Hello
I can reproduce by running your macro twice.
The LOG window opens and is filled with the complete list of the different
LUTs.

[bugz...@fiji.sc]

olivier bardot changed bug 606

What	Removed	Added
Status	RESOLVED	REOPENED
Resolution	WORKSFORME	---

[bugz...@fiji.sc]

Johannes Schindelin changed bug 606

What	Removed	Added
Status	REOPENED	RESOLVED
Resolution	---	FIXED

Comment # 6 on bug 606 from Johannes Schindelin

Ah, finally the missing bit of information! The crucial bit that prevented me
from reproducing was the fact that it only shows up *the second* time!

Please find the explanation of the real bug (hint: it is not that result.push()
statement at all) here:

https://github.com/fiji/fiji/commit/f4dfbb51ac

Pushed and uploaded.