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FigTree Discussion
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Kurt Wollenberg
,
Andrew Rambaut
3
12/6/18
FigTree v1.4.3 time scale offset not working correctly?
I'm still getting time axis errors with FigTree 1.4.4. Gridlines are still shifted off to the
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FigTree v1.4.3 time scale offset not working correctly?
I'm still getting time axis errors with FigTree 1.4.4. Gridlines are still shifted off to the
12/6/18
Simey
6/2/18
Java 10 SE JRE
I recently reinstalled my Win10 64-bit OS and installed Java JRE 10.0.1 and now Figtree throws the
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Java 10 SE JRE
I recently reinstalled my Win10 64-bit OS and installed Java JRE 10.0.1 and now Figtree throws the
6/2/18
Kara O'Keefe
,
Andrew Rambaut
2
3/22/18
success opening figtree on mac
Thanks Kara, Yes, this method will work but I have also posted a preview of v1.4.4 which should also
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success opening figtree on mac
Thanks Kara, Yes, this method will work but I have also posted a preview of v1.4.4 which should also
3/22/18
ssuku...@monell.org
11/15/17
Highlighting individual branches of a big tree
Hi group, I have a big tree (~1000 proteins) and I want to highlight (say in red) small sets of them
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Highlighting individual branches of a big tree
Hi group, I have a big tree (~1000 proteins) and I want to highlight (say in red) small sets of them
11/15/17
Jed Goldstone
9/21/17
Re: Digest for figtree-discuss@googlegroups.com - 5 updates in 1 topic
You could try Dendroscope. My recollection is that it was originally written to deal with large trees
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Re: Digest for figtree-discuss@googlegroups.com - 5 updates in 1 topic
You could try Dendroscope. My recollection is that it was originally written to deal with large trees
9/21/17
Simon Uribe-Convers
,
Brad Ruhfel
5
9/20/17
Creating PDF from the command line for a BIG (25,000) tree
You are right, Brad, the GUI does have that functionality! But my tree exceeds the maximum number of
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Creating PDF from the command line for a BIG (25,000) tree
You are right, Brad, the GUI does have that functionality! But my tree exceeds the maximum number of
9/20/17
Katie Lennard
,
Andrew Rambaut
3
7/19/17
Unable to read file: java.io.EOFException
Hi Andrew, Thanks for your kind reply, I thought the tree was built in FigTree. Have since managed to
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Unable to read file: java.io.EOFException
Hi Andrew, Thanks for your kind reply, I thought the tree was built in FigTree. Have since managed to
7/19/17
davi...@yahoo.com
,
Andrew Rambaut
2
7/18/17
Label "Cartoon" Subtree Region in FigTree v1.4.3?
Hi David, At the moment you can't. You would need to do this in a graphics editor. I will add it
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Label "Cartoon" Subtree Region in FigTree v1.4.3?
Hi David, At the moment you can't. You would need to do this in a graphics editor. I will add it
7/18/17
davi...@yahoo.com
7/17/17
Label Cartoon Subtree in FigTree v1.4.3?
Hi All: When I select a branch and make a "cartoon" for a subtree region, the taxa tip
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Label Cartoon Subtree in FigTree v1.4.3?
Hi All: When I select a branch and make a "cartoon" for a subtree region, the taxa tip
7/17/17
Ellen Sepanian
,
Andrew Rambaut
2
7/17/17
Problem with FigTree
Dear Ellen, I have never seen this issue before. Perhaps it is the font? Try selecting a different
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Problem with FigTree
Dear Ellen, I have never seen this issue before. Perhaps it is the font? Try selecting a different
7/17/17
Nathanael Walker-Hale
2/12/17
'Colour by'
Hi Andrew, First of all, thank you for Figtree, it is an amazing tool. I'm am eager to know if
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'Colour by'
Hi Andrew, First of all, thank you for Figtree, it is an amazing tool. I'm am eager to know if
2/12/17
Terry Jones
, …
Andrew Rambaut
8
1/27/17
Import color scheme file format?
Thanks Terry, Looks like a very useful tool. Hope to add additional functionality to FigTree for
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Import color scheme file format?
Thanks Terry, Looks like a very useful tool. Hope to add additional functionality to FigTree for
1/27/17
Mary O'Neill
2
11/30/16
Same Color Coding Across Multiple Trees
I found a hack that seems to do the trick which I will post here in case someone else wishes to do
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Same Color Coding Across Multiple Trees
I found a hack that seems to do the trick which I will post here in case someone else wishes to do
11/30/16
Ruhfel
,
Andrew Rambaut
3
7/6/16
FigTree cutting off top taxon
Andrew, Thank you very much for your quick response. Works great! Brad From: <figtree-discuss@
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FigTree cutting off top taxon
Andrew, Thank you very much for your quick response. Works great! Brad From: <figtree-discuss@
7/6/16
lucas...@h-its.org
2
5/31/16
Display of bootstrap values and rerooting the tree
Hi, currently, Jaime Cepas, Alexis Stamatakis and I are working on an update to the article "Do
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Display of bootstrap values and rerooting the tree
Hi, currently, Jaime Cepas, Alexis Stamatakis and I are working on an update to the article "Do
5/31/16
Joran Martijn
, …
Ugo Cenci
5
4/11/16
Opening PhyloBayes trees from command line
Hi, What did you do to fix it finally? Thanks,
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Opening PhyloBayes trees from command line
Hi, What did you do to fix it finally? Thanks,
4/11/16
Sophia Nguyen
3/24/16
Number of taxa?
Does anyone have ever got the error like that? Can anybody please tell me what NTAXA is (n=?)? Thanks
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Number of taxa?
Does anyone have ever got the error like that? Can anybody please tell me what NTAXA is (n=?)? Thanks
3/24/16
John Soghigian
1/1/16
FigTree no longer running on Win7 desktop
I've tried both 1.4.2 and 1.4.3, and I can't get either to run on my Windows 7 desktop
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FigTree no longer running on Win7 desktop
I've tried both 1.4.2 and 1.4.3, and I can't get either to run on my Windows 7 desktop
1/1/16
bioz...@gmail.com
,
Andrew Rambaut
2
11/10/15
Hi, Can I use figtree to export separately the bootstrap value of the tree into a file?
I have added this as a feature request for the next version. Andrew On 10 Nov 2015, at 08:50,
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Hi, Can I use figtree to export separately the bootstrap value of the tree into a file?
I have added this as a feature request for the next version. Andrew On 10 Nov 2015, at 08:50,
11/10/15
antoine_uc
11/5/15
figtree: tip size and shape?
Hi Folks, I would like to know if there is way to edit the tip label using a specific shape (eg
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figtree: tip size and shape?
Hi Folks, I would like to know if there is way to edit the tip label using a specific shape (eg
11/5/15
Vivek Keshri
10/2/15
How to hide bootstrap value (only <50)
Dear Friend I would like to hide BS value (only <50%) in FigTree v1.4.2 phylogenetic tree, Please
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How to hide bootstrap value (only <50)
Dear Friend I would like to hide BS value (only <50%) in FigTree v1.4.2 phylogenetic tree, Please
10/2/15
Myriam Harrabi
7/28/15
why do i have automatically a tree that looks like a midpoint tree
why do i have automatically a tree that looks like a midpoint tree if i don't ask to root my tree
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why do i have automatically a tree that looks like a midpoint tree
why do i have automatically a tree that looks like a midpoint tree if i don't ask to root my tree
7/28/15
mahtabmo...@gmail.com
5/18/15
node lable
Hi, when I import my tree from BEAST analysis by Figtree and use node lable, I get wrong time on my
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node lable
Hi, when I import my tree from BEAST analysis by Figtree and use node lable, I get wrong time on my
5/18/15
Arpit Jain
,
Andrew Rambaut
2
4/29/15
Colouring the tip labels on a tree
Hi, Add the colour attribute to the taxa at the top of the nexus file: begin taxa; dimensions ntax=
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Colouring the tip labels on a tree
Hi, Add the colour attribute to the taxa at the top of the nexus file: begin taxa; dimensions ntax=
4/29/15
Carla Bravo de Rueda
4/16/15
Tutorial?
Please can you inform me where to find the tutorial of FigTree? Thank you
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Tutorial?
Please can you inform me where to find the tutorial of FigTree? Thank you
4/16/15
jla...@g.ucla.edu
4/16/15
HELP file or tutorial
Is there a manual or a tutorial available to learn how to use this program?
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HELP file or tutorial
Is there a manual or a tutorial available to learn how to use this program?
4/16/15
Cody Hinchliff
,
Andrew Rambaut
2
3/16/15
Quicklook plugin
Hi Cody, I haven't had a chance to update the QL plugin for quite a while (it has it's own
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Quicklook plugin
Hi Cody, I haven't had a chance to update the QL plugin for quite a while (it has it's own
3/16/15
antoine_37
2/4/15
Reformatting on leaves
Hi I would like to 'reformat' my time-scaled tree in order to focus on the leaves. Is there a
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Reformatting on leaves
Hi I would like to 'reformat' my time-scaled tree in order to focus on the leaves. Is there a
2/4/15
Vivek Keshri
, …
William Gearty
6
2/3/15
How to extract sequences from tree based on bootstrap value
Thank you very much William. Yes it is interesting application. I will try for the same, Thanks a lot
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How to extract sequences from tree based on bootstrap value
Thank you very much William. Yes it is interesting application. I will try for the same, Thanks a lot
2/3/15
darren...@googlemail.com
,
Andrew Rambaut
2
1/27/15
Feature requests: emf and dotted lines
Dear Darren, [1] Unfortunately, the EMF export library I used is no longer functional after some Java
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Feature requests: emf and dotted lines
Dear Darren, [1] Unfortunately, the EMF export library I used is no longer functional after some Java
1/27/15