Hermes2d.spkg in Femhub

[Luke Satin]

Hi,

I downloaded the last Hermes2d from http://femhub.org/stpack/ , which
was newer than the one which is fetched by Femhub from git.

And got error when running configure script:

"
CMake Error at /home/lab/repo/git/femhub-distribution_cyber/local/
share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:70
(MESSAGE):
Could NOT find PTHREAD (missing: PTHREAD_LIBRARY)
Call Stack (most recent call first):
/home/lab/repo/git/femhub-distribution_cyber/spkg/build/
hermes2d-201012090547_4c365d1/hermes_common/cmake/FindPTHREAD.cmake:15
(FIND_PACKAGE_HANDLE_STANDARD_ARGS)
CMakeLists.txt:165 (find_package)


-- Configuring incomplete, errors occurred!
"

Other libraries are using PTHREAD (like Python) and they compiled
without any problems. I guess that's because, they had -lPTHREAD
parameter or similar when configuring/compiling. Should I fix this or
is it already fixed on hermes git? If so, I can download the latest
git and build the spkg from it.

I had to update nearly all packages in Femhub in order to get it to
work. I had to replace python 2.6.4, which is buggy on the latest
Ubuntu even from original Sage repository. I have replaced it with
python 2.7 and now it works.

Thanks,
(Cyber)Luke

[Luke Satin]

When I run:
./femhub --shell
cd spkg/standard/hermes2d-201012090547_qw1zxc/hermes2d
sh spkg-install

I get the same error: CMake Error at /home/lab/repo/git/femhub-
distribution_cyber/local/share/cmake-2.8/Modules/

FindPackageHandleStandardArgs.cmake:70 (MESSAGE):
Could NOT find PTHREAD (missing: PTHREAD_LIBRARY)
Call Stack (most recent call first):

/home/lab/repo/git/femhub-distribution_cyber/spkg/standard/
hermes2d-201012090547_qw1zxc/hermes_common/cmake/FindPTHREAD.cmake:15
(FIND_PACKAGE_HANDLE_STANDARD_ARGS)
CMakeLists.txt:165 (find_package)

But when I run it outside the femhub shell, just in normal shell, it
works:
Found PTHREAD: /usr/lib/i386-linux-gnu/libpthread.so , but another
error is produced:

CMake Error at /usr/share/cmake-2.8/Modules/
FindPackageHandleStandardArgs.cmake:91 (MESSAGE):
Could NOT find JUDY (missing: JUDY_INCLUDE_DIR JUDY_LIBRARY)

Call Stack (most recent call first):

/usr/share/cmake-2.8/Modules/FindPackageHandleStandardArgs.cmake:252
(_FPHSA_FAILURE_MESSAGE)
/home/lab/repo/git/femhub-distribution_cyber/spkg/standard/
hermes2d-201012090547_qw1zxc/hermes_common/cmake/FindJUDY.cmake:9
(FIND_PACKAGE_HANDLE_STANDARD_ARGS)
CMakeLists.txt:166 (find_package)

On Oct 31, 1:24 pm, Luke Satin <luke.sa...@gmail.com> wrote:
> Hi,
>

> I downloaded the last Hermes2d fromhttp://femhub.org/stpack/, which

[Luke Satin]

I can see judy is here: http://femhub.org/stpack/judy-1.0.5.p1.spkg
...so the real problem is, that there should be also a pthread.spkg
package installed in femhub, which does not exist or femhub cmake
should search outside of $SPKG_LOCAL path.

[Pavel Solin]

On Mon, Oct 31, 2011 at 6:21 AM, Luke Satin <luke....@gmail.com> wrote:

I can see judy is here: http://femhub.org/stpack/judy-1.0.5.p1.spkg
...so the real problem is, that there should be also a pthread.spkg
package installed in femhub, which does not exist or femhub cmake
should search outside of $SPKG_LOCAL path.

Hi Luke,

  the old version of Hermes depended on Judy, the new one 

does not. Wrapping the new one should be finished in one week, 

hopefully - I am copying Vlada. Please do not spend too much 

time with the old version of Hermes in femhub-distribution, it 

will be deleted soon.

Pavel

 

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Pavel Solin
University of Nevada, Reno
http://hpfem.org/~pavel

[Luke Satin]

Hi,

I have both Judy and Hermes2D from http://femhub.org/stpack/ ...the
problem is with pthread library not being found in Femhub's
environment.

I tried to delete hermes2d.spkg from ./spkg/standard/ and tried to
compile Femhub again, but it wrote that hermes2d is missing and ended
with fatal error. So I can't compile Femhub and finish my task, which
is modifying Femhub's scripts. I've noticed that there's some option
to build hermes2d from git out of the box, so I'll try it as a last
option.

Luke

On Oct 31, 5:16 pm, Pavel Solin <solin.pa...@gmail.com> wrote:

> University of Nevada, Renohttp://hpfem. <http://hpfem.math.unr.edu/people/pavel/>org/~pavel

[Pavel Solin]

On Mon, Oct 31, 2011 at 9:53 AM, Luke Satin <luke....@gmail.com> wrote:

Hi,

I have both Judy and Hermes2D from http://femhub.org/stpack/ ...the
problem is with pthread library not being found in Femhub's
environment.

I tried to delete hermes2d.spkg from ./spkg/standard/ and tried to
compile Femhub again, but it wrote that hermes2d is missing and ended
with fatal error. So I can't compile Femhub and finish my task, which
is modifying Femhub's scripts. I've noticed that there's some option
to build hermes2d from git out of the box, so I'll try it as a last
option.

Hi Luke, can you try to comment out hermes2d from the 

install script for the time being? Other parts of femhub-distribution 

do not depend on it.

Pavel

http://hpfem.org/~pavel

[Luke Satin]

Hi Pavel,

They do not depend on it? Ok, thank you for your time and help! I did
not spend any time on figuring it out luckily. I just waited for some
answer.

Luke

On Oct 31, 6:18 pm, Pavel Solin <solin.pa...@gmail.com> wrote:

[Pavel Solin]

On Mon, Oct 31, 2011 at 10:35 AM, Luke Satin <luke....@gmail.com> wrote:

Hi Pavel,

They do not depend on it? Ok, thank you for your time and help! I did
not spend any time on figuring it out luckily. I just waited for some
answer.

Hermes is just one of several computational codes. If the 

current version hinders development, it should be 

temporarily removed.

http://hpfem.org/~pavel