Depending on what you are simulating and the number of cores you have available to run FDS, FDS can take a very long time. Days or weeks of time are possible.
Are you running out of RAM?
If this is a case where the timestep has suddenly decreased, do you have inputs that cause some change at that time or do simulation results show some suddent change in behavior that might impact the timestep?
Have you created conditions with high velocities?