MPI run problem (Ubuntu 14.04 - Google Compute Engine, FDS 6.5.3)
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Evgeniy Zhgulev
Apr 26, 2017, 7:16:12 AM4/26/17
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Hello comrades!
I'm trying to install FDS 6.5.3 on Google Compute Engine. OS is Ubuntu 14.04 LTS; machine type is f1-micro.
I use FDS-SMV bundle from this page: https://pages.nist.gov/fds-smv/downloads.html (download manually and install using bash shell).
It is ok to run FDS without MPI.
Next step I install MPI, reading README file in /bin folder and edit .bashrc file (reboot after it):
#FDS -----------------------------------
export MPIDIST_FDS=/home/evgeniy/FDS/FDS6/bin/openmpi_64
export MPIDIST_ETH=
export MPIDIST_IB=
INTEL_SHARED_LIB=$IFORT_COMPILER_LIB/intel64
source ~/.bashrc_fds /home/evgeniy/FDS/FDS6/bin/openmpi_64
#FDS -----------------------------------
Then I test MPI:
mpirun --version
mpirun: error while loading shared libraries: libcrypto.so.10: cannot open shared object file: No such file or directory
To fix it I install this libraries (https://askubuntu.com/questions/339364/libssl-so-10-cannot-open-shared-object-file-no-such-file-or-directory):
sudo apt-get update sudo apt-get install libssl1.0.0 libssl-dev
cd /lib/x86_64-linux-gnu sudo ln -s libssl.so.1.0.0 libssl.so.10
sudo ln -s libcrypto.so.1.0.0 libcrypto.so.10
And test it again:
mpirun --version
--------------------------------------------------------------------------
Sorry! You were supposed to get help about:
orterun:version
But I couldn't open the help file:
/shared/openmpi_64/share/openmpi/help-orterun.txt: No such file or directory. Sorry!
--------------------------------------------------------------------------
When I run the example file, an error also occurs:
mpirun -np 2 fds /home/evgeniy/FDS/FDS6/Examples/Pyrolysis/cell_burn_away.fds
ERROR: The number of MPI processes, 2, exceeds the number of meshes, 1 (CHID: cell_burn_away)
ERROR: The number of MPI processes, 2, exceeds the number of meshes, 1 (CHID: cell_burn_away)
*** The MPI_Comm_f2c() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[(null):2042] Local abort after MPI_FINALIZE completed successfully; not able to aggregate error messages, and not able to guarantee that all other processes were killed!
*** The MPI_Comm_f2c() function was called after MPI_FINALIZE was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.
[(null):2043] Local abort after MPI_FINALIZE completed successfully; not able to aggregate error messages, and not able to guarantee that all other processes were killed!
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code.. Per user-direction, the job has been aborted.
-------------------------------------------------------
--------------------------------------------------------------------------
Sorry! You were supposed to get help about:
orterun:non-zero-exit
But I couldn't open the help file:
/shared/openmpi_64/share/openmpi/help-orterun.txt: No such file or directory. Sorry!
--------------------------------------------------------------------------
When I tried to use other versions of the MPI, there were other errors. In this example I used files from FDS-SMV bundle only and it ended with failure.
Can anyone say, what I am going wrong? Maybe the cause is in GCE's OS features?
I can not understand what is the "/shared" folder.
Regards, Evgeniy
Salah Benkorichi
Apr 26, 2017, 7:19:38 AM4/26/17
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I will take a look
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Salah Benkorichi
Apr 26, 2017, 7:33:06 AM4/26/17
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Try these following stpes :
1. Install FDS , during the installation select
OpenMPI options
Press 1 to install OpenMPI manually [default]
Press 1 to install OpenMPI manually [default]
Press 1 to select this option.
After installation,
Since you have not installed an openmpi yourself, at NIST, they provide openmpi with the bundle.
Try this :
- cd to FDS/FDS6/bin and then type:
gunzip openmpi_1.8.4_linux_64.tar.gz
tar -xvf openmpi_1.8.4_linux_64.tarOpen your .bashrc
copy these two lines.
export MPIDIST_FDS=/home/evgeniy/FDS/FDS6/bin/openmpi_64source ~/.bashrc_fds $MPIDIST_FDSlog off and log in
Now test to see the directory of mpirun
type :
which mpirun
you should get something like this
~/home/evgeniy/FDS/FDS6/bin/openmpi_64/bin/mpirun
Try it and report what you get after it.
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Evgeniy Zhgulev
Apr 26, 2017, 3:04:19 PM4/26/17
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Thank you for your reply.
This is .bashrc contents:
#FDS -----------------------------------export MPIDIST_FDS=/home/evgeniy/FDS/FDS6/bin/openmpi_64export MPIDIST_ETH=export MPIDIST_IB=INTEL_SHARED_LIB=$IFORT_COMPILER_LIB/intel64source ~/.bashrc_fds $MPIDIST_FDS#FDS -----------------------------------
which mpirun: /home/evgeniy/FDS/FDS6/bin/openmpi_64/bin/mpirun
But if testing with command: mpirun -np 2 fds
mpirun: error while loading shared libraries: libcrypto.so.10: cannot open shared object file: No such file or directory
This libraries I can install as I describe in my first post; or can you advise another way?
среда, 26 апреля 2017 г., 14:33:06 UTC+3 пользователь Salah Benkorichi написал:
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Evgeniy Zhgulev
Apr 26, 2017, 3:11:01 PM4/26/17
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For some reason it is inserted into one line...
Kevin
Apr 26, 2017, 3:36:25 PM4/26/17
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ERROR: The number of
MPI processes, 2, exceeds the number of meshes,
1 (CHID: cell_burn_away)
ERROR: The number of MPI processes, 2, exceeds the number of meshes, 1 (CHID: cell_burn_away)
ERROR: The number of MPI processes, 2, exceeds the number of meshes, 1 (CHID: cell_burn_away)
If your input file has only one mesh, you can only use 1 MPI process.
Salah Benkorichi
Apr 26, 2017, 3:44:58 PM4/26/17
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mpirun -np2 fds
That's not how it's used, you are not indicating the input file after fds
We run it as :mpirun -np x fds case.fds
-np : number of process
x : the number you entend to use depending on how many mesh lines you set. If two then use 2.
case.fds : is your input file.
Or, to avoid issues of libraries, try to use the full path :
/home/evgeniy/FDS/FDS6/bin/openmpi_64/bin/mpirun -np x ~/FDS/FDS6/bin/fds case.fds
On 26 April 2017 at 19:56, Evgeniy Zhgulev <evgen...@gmail.com> wrote:
Thank you for your reply.This is .bashrc contents:
#FDS -----------------------------------export MPIDIST_FDS=/home/evgeniy12ru/FDS/FDS6/bin/openmpi_64export MPIDIST_ETH=export MPIDIST_IB=INTEL_SHARED_LIB=$IFORT_COMPILER_LIB/intel64source ~/.bashrc_fds $MPIDIST_FDS#FDS -----------------------------------which mpirun: /home/evgeniy/FDS/FDS6/bin/openmpi_64/bin/mpirun
But if testing with command: mpirun -np 2 fds
This libraries I can install as I describe in my first post; or can you advise another way?среда, 26 апреля 2017 г., 14:33:06 UTC+3 пользователь Salah Benkorichi написал:
Try these following stpes :
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Salah Benkorichi
Apr 26, 2017, 3:51:53 PM4/26/17
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Check these step guides to fix that bug of libraries that you don't have.
Test it now and see what it gives now.
Evgeniy Zhgulev
Apr 26, 2017, 4:00:33 PM4/26/17
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I tried to start with 4 mesh file and full path:
среда, 26 апреля 2017 г., 22:44:58 UTC+3 пользователь Salah Benkorichi написал:
evgeniy12ru@instance-7:~$ /home/evgeniy12ru/FDS/FDS6/bin/openmpi_64/bin/mpirun -np 4 /home/evgeniy12ru/FDS/FDS6/bin/fds /home/evgeniy12ru/Downloads/nozzle.fds
/home/evgeniy12ru/FDS/FDS6/bin/openmpi_64/bin/mpirun: error while loading shared libraries: libcrypto.so.10: cannot open shared object file: No such file or directory
среда, 26 апреля 2017 г., 22:44:58 UTC+3 пользователь Salah Benkorichi написал:
Salah Benkorichi
Apr 26, 2017, 4:03:38 PM4/26/17
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Check the link that I've sent you to fix that bug of libcrypto.so.10
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Evgeniy Zhgulev
Apr 26, 2017, 4:04:58 PM4/26/17
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Thank you, I was wrong. Now I will test 4-mesh file.
среда, 26 апреля 2017 г., 22:36:25 UTC+3 пользователь Kevin написал:
среда, 26 апреля 2017 г., 22:36:25 UTC+3 пользователь Kevin написал:
Salah Benkorichi
Apr 26, 2017, 4:17:23 PM4/26/17
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Test this dummy file,
In the same directory where you put this file, run
/home/evgeniy/FDS/FDS6/bin/openmpi_64/bin/mpirun -np 2 ~/FDS/FDS6/bin/fds openmpi_test.fds
See what it gives.
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Evgeniy Zhgulev
Apr 27, 2017, 3:59:59 AM4/27/17
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Yes, now it works! Big thanks, Salah Benkorichi and Kevin!
Previously, with some other MPI libraries it works incorrectly, as if there were several FDS processes (without MPI) by number of processes indicated in -np X (duplicate in command prompt).
среда, 26 апреля 2017 г., 23:17:23 UTC+3 пользователь Salah Benkorichi написал:
среда, 26 апреля 2017 г., 23:17:23 UTC+3 пользователь Salah Benkorichi написал:
Test this dummy file,In the same directory where you put this file, run/home/evgeniy/FDS/FDS6/bin/openmpi_64/bin/mpirun -np 2 ~/FDS/FDS6/bin/fds openmpi_test.fdsSee what it gives.
On 26 April 2017 at 21:04, Evgeniy Zhgulev <evgen...@gmail.com> wrote:
Thank you, I was wrong. Now I will test 4-mesh file.
среда, 26 апреля 2017 г., 22:36:25 UTC+3 пользователь Kevin написал:ERROR: The number of MPI processes, 2, exceeds the number of meshes, 1 (CHID: cell_burn_away)
ERROR: The number of MPI processes, 2, exceeds the number of meshes, 1 (CHID: cell_burn_away)
If your input file has only one mesh, you can only use 1 MPI process.
On Wednesday, April 26, 2017 at 3:11:01 PM UTC-4, Evgeniy Zhgulev wrote:For some reason it is inserted into one line...
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Salah Benkorichi
Apr 27, 2017, 4:03:02 AM4/27/17
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Thanks for reporting back.
Glad we could be of help.
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Evgeniy Zhgulev
May 27, 2017, 5:02:45 PM5/27/17
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Hello again, now I have a new error after few seconds simulation.
What could it be? Small models are calculated correctly.
Mesh 1 is assigned to MPI Process 0
Mesh 2 is assigned to MPI Process 1
Mesh 3 is assigned to MPI Process 2
Mesh 4 is assigned to MPI Process 3
Mesh 5 is assigned to MPI Process 4
Mesh 6 is assigned to MPI Process 5
Mesh 7 is assigned to MPI Process 6
Mesh 8 is assigned to MPI Process 7
Mesh 9 is assigned to MPI Process 8
Mesh 10 is assigned to MPI Process 9
Mesh 11 is assigned to MPI Process 10
Mesh 12 is assigned to MPI Process 11
Mesh 13 is assigned to MPI Process 12
Mesh 14 is assigned to MPI Process 13
Mesh 15 is assigned to MPI Process 14
Mesh 16 is assigned to MPI Process 15
OpenMP thread 0 of 3 assigned to MPI process 0 of 15
OpenMP thread 2 of 3 assigned to MPI process 0 of 15
OpenMP thread 3 of 3 assigned to MPI process 0 of 15
OpenMP thread 1 of 3 assigned to MPI process 0 of 15
OpenMP thread 3 of 3 assigned to MPI process 2 of 15
OpenMP thread 3 of 3 assigned to MPI process 3 of 15
OpenMP thread 2 of 3 assigned to MPI process 5 of 15
OpenMP thread 3 of 3 assigned to MPI process 5 of 15
OpenMP thread 1 of 3 assigned to MPI process 5 of 15
OpenMP thread 3 of 3 assigned to MPI process 6 of 15
OpenMP thread 3 of 3 assigned to MPI process 13 of 15
OpenMP thread 2 of 3 assigned to MPI process 15 of 15
OpenMP thread 3 of 3 assigned to MPI process 4 of 15
OpenMP thread 3 of 3 assigned to MPI process 8 of 15
OpenMP thread 0 of 3 assigned to MPI process 11 of 15
OpenMP thread 1 of 3 assigned to MPI process 11 of 15
OpenMP thread 2 of 3 assigned to MPI process 11 of 15
OpenMP thread 3 of 3 assigned to MPI process 11 of 15
OpenMP thread 0 of 3 assigned to MPI process 12 of 15
OpenMP thread 1 of 3 assigned to MPI process 12 of 15
OpenMP thread 3 of 3 assigned to MPI process 12 of 15
OpenMP thread 2 of 3 assigned to MPI process 12 of 15
OpenMP thread 0 of 3 assigned to MPI process 7 of 15
OpenMP thread 2 of 3 assigned to MPI process 7 of 15
OpenMP thread 3 of 3 assigned to MPI process 7 of 15
OpenMP thread 1 of 3 assigned to MPI process 7 of 15
OpenMP thread 3 of 3 assigned to MPI process 14 of 15
OpenMP thread 0 of 3 assigned to MPI process 15 of 15
OpenMP thread 1 of 3 assigned to MPI process 15 of 15
OpenMP thread 0 of 3 assigned to MPI process 3 of 15
OpenMP thread 3 of 3 assigned to MPI process 1 of 15
OpenMP thread 2 of 3 assigned to MPI process 1 of 15
OpenMP thread 0 of 3 assigned to MPI process 2 of 15
OpenMP thread 2 of 3 assigned to MPI process 2 of 15
OpenMP thread 1 of 3 assigned to MPI process 2 of 15
OpenMP thread 3 of 3 assigned to MPI process 15 of 15
OpenMP thread 2 of 3 assigned to MPI process 3 of 15
OpenMP thread 1 of 3 assigned to MPI process 3 of 15
OpenMP thread 2 of 3 assigned to MPI process 8 of 15
OpenMP thread 1 of 3 assigned to MPI process 8 of 15
OpenMP thread 0 of 3 assigned to MPI process 14 of 15
OpenMP thread 2 of 3 assigned to MPI process 14 of 15
OpenMP thread 1 of 3 assigned to MPI process 14 of 15
OpenMP thread 0 of 3 assigned to MPI process 5 of 15
OpenMP thread 2 of 3 assigned to MPI process 4 of 15
OpenMP thread 2 of 3 assigned to MPI process 13 of 15
OpenMP thread 0 of 3 assigned to MPI process 4 of 15
OpenMP thread 1 of 3 assigned to MPI process 13 of 15
OpenMP thread 0 of 3 assigned to MPI process 8 of 15
OpenMP thread 1 of 3 assigned to MPI process 4 of 15
OpenMP thread 0 of 3 assigned to MPI process 6 of 15
OpenMP thread 2 of 3 assigned to MPI process 6 of 15
OpenMP thread 1 of 3 assigned to MPI process 6 of 15
OpenMP thread 1 of 3 assigned to MPI process 1 of 15
OpenMP thread 0 of 3 assigned to MPI process 1 of 15
OpenMP thread 0 of 3 assigned to MPI process 13 of 15
OpenMP thread 2 of 3 assigned to MPI process 9 of 15
OpenMP thread 1 of 3 assigned to MPI process 9 of 15
OpenMP thread 3 of 3 assigned to MPI process 10 of 15
OpenMP thread 2 of 3 assigned to MPI process 10 of 15
OpenMP thread 3 of 3 assigned to MPI process 9 of 15
OpenMP thread 0 of 3 assigned to MPI process 9 of 15
OpenMP thread 0 of 3 assigned to MPI process 10 of 15
OpenMP thread 1 of 3 assigned to MPI process 10 of 15
Completed Initialization Step 1
Completed Initialization Step 2
Completed Initialization Step 3
Completed Initialization Step 4 Fire Dynamics Simulator Current Date : May 27, 2017 18:55:18
Version : FDS 6.5.3
Revision : FDS6.5.3-598-geb56ed1
Revision Date : Thu Jan 19 16:12:59 2017 -0500
Compilation Date : Jan 22, 2017 18:04:30 MPI Enabled; Number of MPI Processes: 16
OpenMP Enabled; Number of OpenMP Threads: 4 MPI version: 3.0
MPI library version: Open MPI v1.8.4, package: Open MPI gforney@burn Distribution, ident: 1.8.4, repo rev: v1.8.3-330-g0344f04, Dec 19, 2014 Job TITLE :
Job ID string : park_v1 Time Step: 1, Simulation Time: 0.05 s
Time Step: 2, Simulation Time: 0.10 s
Time Step: 3, Simulation Time: 0.15 s
Time Step: 4, Simulation Time: 0.20 s
Time Step: 5, Simulation Time: 0.26 s
Time Step: 6, Simulation Time: 0.31 s
Time Step: 7, Simulation Time: 0.36 s
Time Step: 8, Simulation Time: 0.41 s
Time Step: 9, Simulation Time: 0.46 s
Time Step: 10, Simulation Time: 0.51 s
Time Step: 20, Simulation Time: 1.02 s
Time Step: 30, Simulation Time: 1.53 s
Time Step: 40, Simulation Time: 2.04 s
Time Step: 50, Simulation Time: 2.55 s
Time Step: 60, Simulation Time: 3.06 s
Time Step: 70, Simulation Time: 3.57 s
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007FD1DDD9E330 Unknown Unknown Unknown
fds 0000000000B2DF33 Unknown Unknown Unknown
fds 000000000081B451 MAIN__ 634 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007FD1DD9E7F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007F1A061B9330 Unknown Unknown Unknown
libc.so.6 00007F1A05EAFDC7 Unknown Unknown Unknown
fds 0000000000425F4B Unknown Unknown Unknown
fds 00000000004FB331 Unknown Unknown Unknown
fds 000000000042E6BE Unknown Unknown Unknown
fds 0000000000409A4E Unknown Unknown Unknown
fds 000000000081B166 MAIN__ 685 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007F1A05E02F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007F28D507C330 Unknown Unknown Unknown
libc.so.6 00007F28D4D72DC7 Unknown Unknown Unknown
fds 0000000000425F4B Unknown Unknown Unknown
fds 00000000004FB331 Unknown Unknown Unknown
fds 000000000042E6BE Unknown Unknown Unknown
fds 0000000000409A4E Unknown Unknown Unknown
fds 000000000081B166 MAIN__ 685 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007F28D4CC5F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007F436A487330 Unknown Unknown Unknown
fds 0000000000B3DF35 Unknown Unknown Unknown
fds 000000000081A526 MAIN__ 655 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007F436A0D0F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007FD4E5BF4330 Unknown Unknown Unknown
libc.so.6 00007FD4E58EADC7 Unknown Unknown Unknown
fds 0000000000425F4B Unknown Unknown Unknown
fds 00000000004FB331 Unknown Unknown Unknown
fds 000000000042E6BE Unknown Unknown Unknown
fds 0000000000409A4E Unknown Unknown Unknown
fds 000000000081B166 MAIN__ 685 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007FD4E583DF45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007F8E95338330 Unknown Unknown Unknown
libc.so.6 00007F8E9502EDC7 Unknown Unknown Unknown
fds 0000000000425F4B Unknown Unknown Unknown
fds 00000000004FB331 Unknown Unknown Unknown
fds 000000000042E6BE Unknown Unknown Unknown
fds 0000000000409A4E Unknown Unknown Unknown
fds 000000000081B166 MAIN__ 685 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007F8E94F81F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007F69ED66D330 Unknown Unknown Unknown
libc.so.6 00007F69ED363DC7 Unknown Unknown Unknown
fds 000000000042589E Unknown Unknown Unknown
fds 0000000000431AED Unknown Unknown Unknown
fds 000000000040A894 Unknown Unknown Unknown
fds 000000000081D0D2 fds_IP_timeout_ 2711 main.f90
fds 00000000008EE342 fds_IP_mesh_excha 2448 main.f90
fds 000000000081A147 MAIN__ 639 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007F69ED2B6F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007FE880C9E330 Unknown Unknown Unknown
libc.so.6 00007FE880994DC7 Unknown Unknown Unknown
fds 0000000000425F4B Unknown Unknown Unknown
fds 00000000004FB331 Unknown Unknown Unknown
fds 000000000042E6BE Unknown Unknown Unknown
fds 0000000000409A4E Unknown Unknown Unknown
fds 000000000081B166 MAIN__ 685 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007FE8808E7F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007FCC95718330 Unknown Unknown Unknown
libc.so.6 00007FCC9540EDC7 Unknown Unknown Unknown
fds 000000000042589E Unknown Unknown Unknown
fds 0000000000431AED Unknown Unknown Unknown
fds 000000000040A894 Unknown Unknown Unknown
fds 000000000081D0D2 fds_IP_timeout_ 2711 main.f90
fds 00000000008EE342 fds_IP_mesh_excha 2448 main.f90
fds 000000000081A147 MAIN__ 639 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007FCC95361F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007FCC99E33330 Unknown Unknown Unknown
libc.so.6 00007FCC99B29DC7 Unknown Unknown Unknown
fds 0000000000425F4B Unknown Unknown Unknown
fds 00000000004FB331 Unknown Unknown Unknown
fds 000000000042E6BE Unknown Unknown Unknown
fds 0000000000409A4E Unknown Unknown Unknown
fds 000000000081B166 MAIN__ 685 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007FCC99A7CF45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007FDA0E325330 Unknown Unknown Unknown
libc.so.6 00007FDA0E01BDC7 Unknown Unknown Unknown
fds 0000000000425F4B Unknown Unknown Unknown
fds 00000000004FB331 Unknown Unknown Unknown
fds 000000000042E6BE Unknown Unknown Unknown
fds 0000000000409A4E Unknown Unknown Unknown
fds 000000000081B166 MAIN__ 685 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007FDA0DF6EF45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007F235E573330 Unknown Unknown Unknown
fds 0000000000EC981E Unknown Unknown Unknown
fds 000000000081B437 MAIN__ 633 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007F235E1BCF45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007FA4655BE330 Unknown Unknown Unknown
libc.so.6 00007FA4652B4DC7 Unknown Unknown Unknown
fds 0000000000425F4B Unknown Unknown Unknown
fds 00000000004FB331 Unknown Unknown Unknown
fds 000000000042E6BE Unknown Unknown Unknown
fds 0000000000409A4E Unknown Unknown Unknown
fds 000000000081B166 MAIN__ 685 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007FA465207F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007FFBB40D8330 Unknown Unknown Unknown
libc.so.6 00007FFBB3DCEDC7 Unknown Unknown Unknown
fds 0000000000425F4B Unknown Unknown Unknown
fds 00000000004FB331 Unknown Unknown Unknown
fds 000000000042E6BE Unknown Unknown Unknown
fds 0000000000409A4E Unknown Unknown Unknown
fds 000000000081B166 MAIN__ 685 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007FFBB3D21F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007F2FA0AF8330 Unknown Unknown Unknown
libc.so.6 00007F2FA07EEDC7 Unknown Unknown Unknown
fds 0000000000425F4B Unknown Unknown Unknown
fds 00000000004FB331 Unknown Unknown Unknown
fds 000000000042E6BE Unknown Unknown Unknown
fds 0000000000409A4E Unknown Unknown Unknown
fds 000000000081B166 MAIN__ 685 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007F2FA0741F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
forrtl: error (78): process killed (SIGTERM)
Image PC Routine Line Source
fds 00000000008042A5 Unknown Unknown Unknown
fds 0000000000801EC7 Unknown Unknown Unknown
fds 00000000007B31D4 Unknown Unknown Unknown
fds 00000000007B2FE6 Unknown Unknown Unknown
fds 000000000072D969 Unknown Unknown Unknown
fds 000000000073481E Unknown Unknown Unknown
libpthread.so.0 00007FA209B18330 Unknown Unknown Unknown
fds 0000000000EC96B9 Unknown Unknown Unknown
libiomp5.so 00007FA20ABF7BC3 Unknown Unknown Unknown
libiomp5.so 00007FA20ABC98C7 Unknown Unknown Unknown
libiomp5.so 00007FA20ABCAD0C Unknown Unknown Unknown
libiomp5.so 00007FA20AB9F6C8 Unknown Unknown Unknown
fds 0000000000EC7B13 Unknown Unknown Unknown
fds 000000000081B437 MAIN__ 633 main.f90
fds 000000000040981E Unknown Unknown Unknown
libc.so.6 00007FA209761F45 Unknown Unknown Unknown
fds 0000000000409729 Unknown Unknown Unknown
Salah Benkorichi
May 27, 2017, 5:15:40 PM5/27/17
to fds...@googlegroups.com
1. I have a feeling your openmpi is not running properly for some reason. Can you share how you are running it? Are you following the same process as I showed you last time?
2. Since, small models works fine, then I would say this is a memory issue. You check it first by:
on terminal type:
ulimit -a
Share what you get.
If you haven't set it before, you are likely to get memory stacksize limited. Here is how you set it to unlimited.
ulimit -s unlimited
This will be only temperoray on the same terminal you are using. To make it last , you need to add that line to your .bashrc file, you will find it on your home directory, open it with text editor and then past ulimit -s unlimited
Log off and login again and test the same case file and see if it works.
Report what you get.
Salah
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Kevin
May 30, 2017, 9:44:49 AM5/30/17
to FDS and Smokeview Discussions
Post your case to the Issue Tracker and I'll try to run it on our cluster.
Eugene
Jun 6, 2020, 3:11:44 PM6/6/20
to FDS and Smokeview Discussions
Hello, can you delete thes topic?
Eugene
Jun 6, 2020, 3:13:12 PM6/6/20
to FDS and Smokeview Discussions
*this
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