Parametric bootstrap

[Vicente Castillo]

Hello all,

I have some problems understanding the parameric bootstrap. 

As far I know, a way to obtain a CI for parameter estimates is to simulate a dataset with the ML values of the selected model.

But there are 2 parameters in fastsimcoal that i dont really understand.

If my dataset contains 33,000 no linked SNPs,

the following lines are ok? 

//Number of independent loci [chromosome]
33000 0

//per Block: data type, num loci, rec. rate and mut rate + optional parameters
FREQ 1 0 1.5e-9 OUTEXP

thanks

[Chenfei Zheng]

Hi Vicent，

I think this number of independent loci [chromosome] should be 1 when you set the data type as "FREQ"
Hope it will be helpful

[yy Wu]

I wonder if it's normal to have only one build file *_boot_1.simparam when running bootstrap? This is my command fsc28 -i *_boot.par -n1 -j -m -s0 -I -x -q, I don't know what the problem is, any suggestions are appreciated!