Problem of the simluation with best model

[Jie Gao]

I got a problem when I simulate the 100 bootstrap SFS files with the best_model.par file.

It seems the job is running well, but after I got the first one or three files, the job is still running, but no more SFS files are generated.

And the situation could remain for a long time(1-2days) and still only have the file generated when I just submitted the task.

I have tried several times but could not figure out the reason. 

I don't know if anyone has been in the same situation as me. I attached my input file and command here. 

My bash command: fsc26 -i FBENOFA_M2_maxL.par -n100 -j -d -x -s0 -I -q

My par file:

###############

//Samples sizes and samples age 

28

22

19

//Growth rates : negative growth implies population expansion

0

0

0

//Number of migration matrices : 0 implies no migration between demes

3

//Migration matrix 0

0.0000 0.0000 3.438032471615744e-06 

0.0000 0.0000 1.646254041831507e-04 

7.138786425883006e-05 2.881957593247007e-06 0.0000 

//Migration matrix 1

0.0000 2.533366283880698e-05 0.0000  

6.125582742928466e-03 0.0000 0.0000  

0.0000 0.0000 0.0000 

//Migration matrix 2

0.0000 0.0000 0.0000  

0.0000 0.0000 0.0000   

0.0000 0.0000 0.0000 

//historical event: time, source, sink, migrants, new deme size, new growth rate, migration matrix index

2 historical event

844173 0 2 1 2.261873899026158e+00 0 1

1479284 1 0 1 6.433472147501677e-01 0 2

//Number of independent loci [chromosome] 

20000 0

//Per chromosome: Number of contiguous linkage Block: a block is a set of contiguous loci

1

//per Block:data type, number of loci, per generation recombination and mutation rates and optional parameters

DNA 1000 0 9.84e-9 0.33

#################################

I would be very grateful if anyone could find out the problem. 

Thank you all!

Best

[yl Chen]

Hi, have you solved this question? I'm having the same problem..

Thanks in advance!

[yy Wu]

I wonder if it's normal to have only one build file *_boot_1.simparam when running bootstrap? This is my command fsc28 -i *_boot.par -n1 -j -m -s0 -I -x -q, I don't know what the problem is, any suggestions are appreciated!