New version of arlequin to compute the SFS
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Laurent Excoffier
Apr 11, 2015, 1:12:44 PM4/11/15
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Hi,
as mentioned in some earlier post, I have released a new version of Arlequin, which computes the 1D, 2D or multidimensional SFS from arp files (e.g. as generated by fsc252).
Note that alleles must be coded as 0 or 1,2,3, and that 0 is assumed to be ancestral (except if you want to compute the MAF SFS). Have a look at example files provided with arlequin in the SFS folder.
The new web site can be found tentatively on http://cmpg.unibe.ch/software/arlequin352/
You can download the windows version to make these computations.
Feedbacks are welcome
I'll make the offocial release of arlequin ver 3.5.2 in a few days, but fastsimcoal google group members can try and test it in advance.
best
laurent
as mentioned in some earlier post, I have released a new version of Arlequin, which computes the 1D, 2D or multidimensional SFS from arp files (e.g. as generated by fsc252).
Note that alleles must be coded as 0 or 1,2,3, and that 0 is assumed to be ancestral (except if you want to compute the MAF SFS). Have a look at example files provided with arlequin in the SFS folder.
The new web site can be found tentatively on http://cmpg.unibe.ch/software/arlequin352/
You can download the windows version to make these computations.
Feedbacks are welcome
I'll make the offocial release of arlequin ver 3.5.2 in a few days, but fastsimcoal google group members can try and test it in advance.
best
laurent
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