Error: Segmentation fault (core dumped)

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白墨墨白

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Jun 2, 2026, 3:41:19 AM (10 days ago) Jun 2
to fastsimcoal2
Hi all,

I am trying to use fastsimcoal2 (fsc28) to estimate the population history and gene flow, but here is something wrong. I will show my data and work step, hoping someone can help me.

*****here is detail******

I have two populations. SNP called and filtered with gatk. easySFS used to calculate the folded SFS with command, --proj 24,28 --order Ax,Ex --dtype int -a -f, *_jointMAFpop1_0.obs file directly used for fastsimcoal2. 

****here is command for fastsimcoal2******

# 如果文件是Windows换行,先转一下
#dos2unix AxEx_AncientANDRecentGeneFlow.tpl AxEx_AncientANDRecentGeneFlow.est AxEx_AncientANDRecentGeneFlow_jointMAFpop1_0.obs 2>/dev/null

ulimit -s 1024000

#fsc28模型测试
${fsc28} \
  -t ${tpl} \
  -e ${est} \
  -m -M \
  -n 10 \
  -L 2 \
  -c 1 \
  --removeZeroSFS

*_jointMAFpop1_0.obs, .tpl and .est file is uploaded. 

Thanks for your help !

kami


AxEx_AncientANDRecentGeneFlow_jointMAFpop1_0.obs
AxEx_AncientANDRecentGeneFlow.tpl
AxEx_AncientANDRecentGeneFlow.est
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