I get an error doing range matching: fastr says that a nii.gz file is not a valid nifti compressed file.
When I try to recreate the error with fastr execute, then there is no problem.
I am running the latest version of fastr develop.
[INFO] provenance:0139 >> DATA URI for: val://tmp/fastr_PROOF_XNAT_VolumeCalc_L_T0_o7_n08/n4_atlas/scan_9003406_20060322/__fastr_result__.pickle.gz?outputname=image&nr=0, job: <Job
id=PROOF_XNAT_VolumeCalc_L_T0___n4_atlas___scan_9003406_20060322
tool=n4.N4 1.6
tmpdir=vfs://tmp/fastr_PROOF_XNAT_VolumeCalc_L_T0_o7_n08/n4_atlas/scan_9003406_20060322/>
[INFO] provenance:0139 >> DATA URI for: val://tmp/fastr_PROOF_XNAT_VolumeCalc_L_T0_o7_n08/range_mask_atlas/norm_mask_atlas_9003406_20060322/__fastr_result__.pickle.gz?outputname=output&nr=0&sampleid=norm_mask_atlas_9003406_20060322, job: <SourceJob
id=PROOF_XNAT_VolumeCalc_L_T0___range_mask_atlas___norm_mask_atlas_9003406_20060322
tmpdir=vfs://tmp/fastr_PROOF_XNAT_VolumeCalc_L_T0_o7_n08/range_mask_atlas/norm_mask_atlas_9003406_20060322/>
[INFO] job:0732 >> Resetting current directory to /home/mhansson/fastr-scripts/PROOF_scripts
[WARNING] job:0972 >> Output value [NiftiImageFileCompressed] "vfs://tmp/fastr_PROOF_XNAT_VolumeCalc_L_T0_o7_n08/rama_atlas/scan_9003406_20060322/image_0.nii.gz" not valid for datatype "NiftiImageFileCompressed"
[INFO] job:0975 >> Data for output image is invalid
[WARNING] job:0922 >> The output "image" is invalid!