Error loading masks from disk

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Mattias Hansson

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Apr 20, 2017, 4:44:49 AM4/20/17
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Running develop.

File “MultiAtlasApp_PROOF_XNAT_volumeCalc_toQIB_Instance_LEFT_T0.py”, line 1223, in <module>
1229     main()
1230   File “MultiAtlasApp_PROOF_XNAT_volumeCalc_toQIB_Instance_LEFT_T0.py”, line 1212, in main
1231     network.execute(sourcedata_part, sinkdata,cluster_queue=“week”,tmpdir=staging_dir)
1232   File “/home/mhansson/virtual_env_fastr_develop/fastr/fastr/core/network.py”, line 995, in execute
1233     joblist = node.execute()
1234   File “/home/mhansson/virtual_env_fastr_develop/fastr/fastr/core/node.py”, line 1165, in execute
1235     for sample_index, sample_id, job_data, job_depends, failed_annotations in self.input_group_combiner:
1236   File “/home/mhansson/virtual_env_fastr_develop/fastr/fastr/core/node.py”, line 469, in iter_input_groups
1237     for sample_payloads in itertools.product(*[ig.iterinputvalues for ig in self.input_groups.values()]):
1238   File “/home/mhansson/virtual_env_fastr_develop/fastr/fastr/core/node.py”, line 300, in iterinputvalues
1239     yield self[index]
1240   File “/home/mhansson/virtual_env_fastr_develop/fastr/fastr/core/node.py”, line 164, in __getitem__
1241     target_index=index)
1242   File “/home/mhansson/virtual_env_fastr_develop/fastr/fastr/core/node.py”, line 260, in find_source_index
1243     target_index=target_index)
1244   File “/home/mhansson/virtual_env_fastr_develop/fastr/fastr/core/node.py”, line 288, in solve_broadcast
1245     raise exceptions.FastrSizeMismatchError(‘The estimated size after broadcast matching is incorrect! (estimated {}, actual {})’.format(estimated_source_size, source_size))
1246 fastr.exceptions.FastrSizeMismatchError: The estimated size after broadcast matching is incorrect! (estimated (10,), actual (9,))

Script: /home/mhansson/fastr-scripts/PROOF_scripts/MultiAtlasApp_PROOF_XNAT_volumeCalc_toQIB_Instance_LEFT_T0.py

output file: /home/mhansson/fastr-scripts/PROOF_scripts/MultiAtlasApp_PROOF_XNAT_volumeCalc_toQIB_Instance_LEFT_T0_out.txt

staging folder:/scratch/mhansson/staging/testdir_L_T0_test_develop

I did a fastr execute in /scratch/mhansson/staging/testdir_L_T0_test/atlas_labels_genmask/groundtruth_9056363_20051010 and then it worked. So I don't understand how to get this script to run. 

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