Fastr Users

Thanks for the new version! Two things I noticed on my system: "pip install --upgrade fastr==2.1

Hi Sara, As Marcel indicated, we are currently using Python 2.7 for fastr. We a planning to release a

Yes, that's as clear as I could imagine, especially with the added tool name and path information

We just release Fastr 2.0.0, this update bring a lot of new features and bug fixes. The full

I was wondering if this feature would be added in the next fastr update? I think it is quite a

Hi Mattias, The reason fastr crashes and throws and exception is because you appearantly are using 13

Execution stops at the reg_mask node, but with fastr execute it produces output. I am running fastr

'python' '/home/mhansson/fastr-tools-private/image_analysis/tools/bigrtools/bin/

When I run the script: /home/mhansson/multi_im_reg_test_atlasmask_body.py registration does not

Running develop. File “MultiAtlasApp_PROOF_XNAT_volumeCalc_toQIB_Instance_LEFT_T0.py”, line 1223, in

Ofc, when i run using the fastr develop module, I cannot load dicoms from XNAT which does work in the

Hi Mattias, I think I found the problem. Somehow the xnat plugin did not disable verbosity and I hadn

I added a new field {specials.workdir} that should have the desired effect. We need to test this and

On Thursday, April 6, 2017 at 12:52:51 PM UTC+2, Marcel Zwiers wrote: It seems to me that there is a

Adding a namespace does solve it to some extent, but specifying the version of the tool seems to me

Dear FASTR users, This Friday we're organizing another FASTR hackathon in Na2502k (at EMC).

After some test running, with help from Hakim, we found that the nipype package was the issue. Thus a

Seems it cannot find the resulting_datatype, this is most likely because a preferred datatype was not

The problem actually is in the Input.append, which is used to combine multiple outputs into a single

Dear FASTR users, Next Friday we will have another FASTR hackathon. If you would like to join, please

Somehow my script wont load dicoms from xnat anymore. I get the following error: [8:03] [MainProcess:

Yes, that would be it. The 25th floor is locked, but you can call/slack us when you need someone to

We are proud to announce a new release of Fastr. The 1.1.0 release is a large release that contains a

Dear all, Just a resend of the message I sent this morning. A lot of you didn't receive them as

Hi Baldur, That sound interesting, but if you collect from multiple workers I suppose we need to

Dear Martijn, At the moment we do not have a system in place for this type of management. If you run

I updated the collector plugin document. It can be found at collectorplugin-reference