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1–27 of 27
Welcome to the Fastr User Q&A Forum.
Find Fastr documentation on
fastr.rtfd.org
Find Fastr code on
https://bitbucket.org/bigr_
erasmusmc/fastr
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Hakim Achterberg
,
Marcel Zwiers
4
4/13/18
Announcement
Fastr 2.1.0 Release
Thanks for the new version! Two things I noticed on my system: "pip install --upgrade fastr==2.1
unread,
Announcement
Fastr 2.1.0 Release
Thanks for the new version! Two things I noticed on my system: "pip install --upgrade fastr==2.1
4/13/18
Marcel Zwiers
,
Hakim Achterberg
2
3/15/18
Re: [fastr-users] issue while importing fastr
Hi Sara, As Marcel indicated, we are currently using Python 2.7 for fastr. We a planning to release a
unread,
Re: [fastr-users] issue while importing fastr
Hi Sara, As Marcel indicated, we are currently using Python 2.7 for fastr. We a planning to release a
3/15/18
Martijn Starmans
,
Hakim Achterberg
3
12/14/17
Unclear Error message when tool bin not found
Yes, that's as clear as I could imagine, especially with the added tool name and path information
unread,
Unclear Error message when tool bin not found
Yes, that's as clear as I could imagine, especially with the added tool name and path information
12/14/17
Hakim Achterberg
9/28/17
Announcement
Fastr 2.0.0 release
We just release Fastr 2.0.0, this update bring a lot of new features and bug fixes. The full
unread,
Announcement
Fastr 2.0.0 release
We just release Fastr 2.0.0, this update bring a lot of new features and bug fixes. The full
9/28/17
Martijn Starmans
,
Hakim Achterberg
3
7/27/17
Q&A
XNAT Plugin Error
I was wondering if this feature would be added in the next fastr update? I think it is quite a
unread,
Q&A
XNAT Plugin Error
I was wondering if this feature would be added in the next fastr update? I think it is quite a
7/27/17
Mattias Hansson
,
Hakim Achterberg
3
6/29/17
Q&A
Execution stops at gaussian scale space, but with fastr execute it works
Hi Mattias, The reason fastr crashes and throws and exception is because you appearantly are using 13
unread,
Q&A
Execution stops at gaussian scale space, but with fastr execute it works
Hi Mattias, The reason fastr crashes and throws and exception is because you appearantly are using 13
6/29/17
Mattias Hansson
6/28/17
Q&A
Execution stops at elastix node, but works with fastr execute
Execution stops at the reg_mask node, but with fastr execute it produces output. I am running fastr
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Q&A
Execution stops at elastix node, but works with fastr execute
Execution stops at the reg_mask node, but with fastr execute it produces output. I am running fastr
6/28/17
Mattias Hansson
4/24/17
Q&A
error using applyclassifier, develop branch
'python' '/home/mhansson/fastr-tools-private/image_analysis/tools/bigrtools/bin/
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Q&A
error using applyclassifier, develop branch
'python' '/home/mhansson/fastr-tools-private/image_analysis/tools/bigrtools/bin/
4/24/17
Mattias Hansson
4/21/17
Q&A
registration does not start when running script but fastr execute works
When I run the script: /home/mhansson/multi_im_reg_test_atlasmask_body.py registration does not
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Q&A
registration does not start when running script but fastr execute works
When I run the script: /home/mhansson/multi_im_reg_test_atlasmask_body.py registration does not
4/21/17
Mattias Hansson
4/20/17
Q&A
Error loading masks from disk
Running develop. File “MultiAtlasApp_PROOF_XNAT_volumeCalc_toQIB_Instance_LEFT_T0.py”, line 1223, in
unread,
Q&A
Error loading masks from disk
Running develop. File “MultiAtlasApp_PROOF_XNAT_volumeCalc_toQIB_Instance_LEFT_T0.py”, line 1223, in
4/20/17
Mattias Hansson
,
Martijn Starmans
6
4/14/17
Q&A
Nifti error in fastr script
Ofc, when i run using the fastr develop module, I cannot load dicoms from XNAT which does work in the
unread,
Q&A
Nifti error in fastr script
Ofc, when i run using the fastr develop module, I cannot load dicoms from XNAT which does work in the
4/14/17
Mattias Hansson
,
Hakim Achterberg
2
4/13/17
Q&A
Problem loading dicoms from XNAT
Hi Mattias, I think I found the problem. Somehow the xnat plugin did not disable verbosity and I hadn
unread,
Q&A
Problem loading dicoms from XNAT
Hi Mattias, I think I found the problem. Somehow the xnat plugin did not disable verbosity and I hadn
4/13/17
Hakim Achterberg
,
Marcel Zwiers
9
4/13/17
Announcement
Fastr 1.2.0 release
I added a new field {specials.workdir} that should have the desired effect. We need to test this and
unread,
Announcement
Fastr 1.2.0 release
I added a new field {specials.workdir} that should have the desired effect. We need to test this and
4/13/17
Marcel Zwiers
,
Hakim Achterberg
2
4/6/17
Q&A
Bug in ../fastr/resources/datatypes/Boolean.py
On Thursday, April 6, 2017 at 12:52:51 PM UTC+2, Marcel Zwiers wrote: It seems to me that there is a
unread,
Q&A
Bug in ../fastr/resources/datatypes/Boolean.py
On Thursday, April 6, 2017 at 12:52:51 PM UTC+2, Marcel Zwiers wrote: It seems to me that there is a
4/6/17
Marcel Zwiers
2
4/4/17
Q&A
Multiple version of the same tool
Adding a namespace does solve it to some extent, but specifying the version of the tool seems to me
unread,
Q&A
Multiple version of the same tool
Adding a namespace does solve it to some extent, but specifying the version of the tool seems to me
4/4/17
Annegreet van Opbroek
4/4/17
Upcoming FASTR hackathon
Dear FASTR users, This Friday we're organizing another FASTR hackathon in Na2502k (at EMC).
unread,
Upcoming FASTR hackathon
Dear FASTR users, This Friday we're organizing another FASTR hackathon in Na2502k (at EMC).
4/4/17
Martijn Starmans
2
3/23/17
Q&A
DRMAA Exectution Error
After some test running, with help from Hakim, we found that the nipype package was the issue. Thus a
unread,
Q&A
DRMAA Exectution Error
After some test running, with help from Hakim, we found that the nipype package was the issue. Thus a
3/23/17
Marcel Zwiers
,
Hakim Achterberg
3
3/16/17
Q&A
'NoneType' object has no attribute 'id'
Seems it cannot find the resulting_datatype, this is most likely because a preferred datatype was not
unread,
Q&A
'NoneType' object has no attribute 'id'
Seems it cannot find the resulting_datatype, this is most likely because a preferred datatype was not
3/16/17
Mattias Hansson
,
Hakim Achterberg
3
3/16/17
Q&A
Appending input in Fastr v 1.2.0
The problem actually is in the Input.append, which is used to combine multiple outputs into a single
unread,
Q&A
Appending input in Fastr v 1.2.0
The problem actually is in the Input.append, which is used to combine multiple outputs into a single
3/16/17
Annegreet van Opbroek
2/27/17
Next FASTR Hackathon
Dear FASTR users, Next Friday we will have another FASTR hackathon. If you would like to join, please
unread,
Next FASTR Hackathon
Dear FASTR users, Next Friday we will have another FASTR hackathon. If you would like to join, please
2/27/17
Mattias Hansson
2/21/17
Q&A
Command runs on node, but not on cluster when called in a fastr script
Somehow my script wont load dicoms from xnat anymore. I get the following error: [8:03] [MainProcess:
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Q&A
Command runs on node, but not on cluster when called in a fastr script
Somehow my script wont load dicoms from xnat anymore. I get the following error: [8:03] [MainProcess:
2/21/17
Annegreet van Opbroek
, …
Hakim Achterberg
4
2/1/17
Hackathon next Friday
Yes, that would be it. The 25th floor is locked, but you can call/slack us when you need someone to
unread,
Hackathon next Friday
Yes, that would be it. The 25th floor is locked, but you can call/slack us when you need someone to
2/1/17
Hakim Achterberg
12/8/16
Announcement
Fastr 1.1.0 released
We are proud to announce a new release of Fastr. The 1.1.0 release is a large release that contains a
unread,
Announcement
Fastr 1.1.0 released
We are proud to announce a new release of Fastr. The 1.1.0 release is a large release that contains a
12/8/16
Annegreet van Opbroek
2
11/29/16
FASTR hackathon 02-12-2016
Dear all, Just a resend of the message I sent this morning. A lot of you didn't receive them as
unread,
FASTR hackathon 02-12-2016
Dear all, Just a resend of the message I sent this morning. A lot of you didn't receive them as
11/29/16
Martijn Starmans
, …
Hakim Achterberg
6
11/28/16
Q&A
Print commands
Hi Baldur, That sound interesting, but if you collect from multiple workers I suppose we need to
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Q&A
Print commands
Hi Baldur, That sound interesting, but if you collect from multiple workers I suppose we need to
11/28/16
Martijn Starmans
,
Hakim Achterberg
2
11/28/16
Q&A
Data flows and memory consumption
Dear Martijn, At the moment we do not have a system in place for this type of management. If you run
unread,
Q&A
Data flows and memory consumption
Dear Martijn, At the moment we do not have a system in place for this type of management. If you run
11/28/16
Adriaan Versteeg
,
Hakim Achterberg
3
1/12/16
Q&A
How to use the son output of a command line tool.
I updated the collector plugin document. It can be found at collectorplugin-reference
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Q&A
How to use the son output of a command line tool.
I updated the collector plugin document. It can be found at collectorplugin-reference
1/12/16