SPARQL over genome graphs stored in Odgi now supports FALDO

[Jerven Bolleman]

Dear Faldo users and co-developers,

I just want to let you know that SPODGI[1] supports FALDO now.

SPODGI allows you to use any genome variation graph in Odgi[2] as a SPARQL

database. This uses the known structures of the C++ objects to match predicates and

types in an efficient way while using the Python rdflib to execute the SPARQL query in a lazy manner.

This is still early beta but might be of interest to you.

Regards,

Jerven

[1] https://github.com/jervenbolleman/spodgi

[2] https://github.com/vgteam/odgi

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Jerven Bolleman
m...@jerven.eu