Leibniz Institute for Baltic Sea
Research Warnemünde Physical Oceanography and Instrumentation Seestrasse 15 18119 Rostock Germany |
Hi Ulf,
My approach would be to compute the final bottom flux in the “do_bottom” routine of a FABM module, as you suggest. The calculation at that point can depend on near-bottom temperature, salinity, and anything else that might be relevant, including a 2D field that is read-in externally (your original oxygen flux). The calculation itself could either be done inside your oxygen module, or if you’d rather leave that untouched (and more generic), you could add a small stand-alone FABM module that just computes the bottom flux and applies it to an existing state variable, in this case your oxygen tracer.
That seems about as generic as I could imagine… The alternative would be to code the logic inside GETM, I guess, but seems even more specific. When implementing it within FABM, it would at least be usable in other hosts, e.g., GOTM.
Cheers,
Jorn
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