So the structure is like so:
[project directory]
->bower_components
->config.ini
->favicons
->[favicon files]
->index.php
->js
->lib
->ui
That is the basic idea; I left out the contents of directories like bower_components, js, lib, and ui and some other files in the root directory such as .bowercc, .git, bower.json, composer.json etc. Does that help?