For protein data, we offer 18 commonly used fixed-rate substitution matrices as well as a GTR model. We also implemented a comprehensive set of topological proposals that assure rapid convergence and adapted these for massively parallel execution.
• disc( m 1 = w 1 , m 2 = w 2 , . . ., m n = w n )a discrete probability distribution assigning weights w i to protein substitutionmatrices m i . If only one model is specified, this is equivalent to a fixed prior.m may be one of the following models: DAYHOFF, DCMUT, JTT, MTREV,WAG, RTREV, CPREV, VT, BLOSUM62, MTMAM, LG, MTART, MTZOA,PMB, HIVB, HIVW, JTTDCMUT, FLU.
Thanks a lot, I'll give it a try.
You received this message because you are subscribed to a topic in the Google Groups "ExaBayes" group.
To unsubscribe from this topic, visit https://groups.google.com/d/topic/exabayes/_NJzyBVZpxY/unsubscribe.
To unsubscribe from this group and all its topics, send an email to exabayes+u...@googlegroups.com.
For more options, visit https://groups.google.com/d/optout.