ExaBayes error

[María Valerio]

Hi everyone!

I am using ExaBayes to generate a phylogenetic tree for around 100 samples from around 353 genes, and I'm encountering an error each time I run it. The error file that is generated says:

####################################################

bash: module: línea 1: error sintáctico: no se esperaba el final del fichero
bash: error al importar la definición de la función para `BASH_FUNC_module'
qrsh_starter: cannot change to directory /home/marvalde/exabayes: No such file or directory

and so on

#########################################################

Which in English translates into:

"bash: module: line 1: Syntactic error: the end of the file wasn't expected"

"bash: error when importing the definition of the function for 'BASH_FUNC_module'"

My instructions' command in the .sge file looks like this:

/usr/lib64/openmpi/bin/mpiexec --mca btl openib,self,sm --mca plm_rsh_agent rsh --np 16 /home/software/exabayes-1.5/bin/exabayes -f eriocarpum.phy -m DNA -n outexabayes -s $RANDOM -c config.nex

My configuration file (config.nex) looks like this:

#NEXUS

begin run;
 numgen 3e5
 numRuns 2
 numCoupledChains 4
end;

I would really appreciate any kind of insight about this! Thanks in advance,

María

[Alexandros Stamatakis]

Dear Maria,

If you are running this on a cluster you should rather get in touch with
the sys-admins and support stuff. The problem seems to be related with
the setup of the computer system you are using and not ExaBayes per se.

Alexis

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Alexandros (Alexis) Stamatakis

ERA Chair, Institute of Computer Science, Foundation for Research and
Technology - Hellas
Research Group Leader, Heidelberg Institute for Theoretical Studies
Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology

www.biocomp.gr (Crete lab)
www.exelixis-lab.org (Heidelberg lab)

[María Valerio]

I am in fact running it on a cluster. I have already contacted the responsible staff but their solutions were not effective, so it was worth a try to write on here, but it seems that you're right.

Εν πάση περιπτώσει, σας ευχαριστώ.

Μαρία