evigene22jan14 software update for Gnodes
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Don Gilbert
Jan 13, 2022, 2:38:16 PM1/13/22
to EvidentialGene
evigene22jan14.tar update is available at
This public release of EvidentialGene/Gnodes software includes what I believe is a stable public release for Gnodes with a paper in draft form soon to be available.
Please comment to me/project if you try out Gnodes, evident...@googlegroups.com or gilb...@indiana.edu If you have problems with it, they will be fixed as soon as possible.
Gnodes is a measuring tool for both chromosome assemblies and the genes there-in, and RNA-assembled genes. One of its most useful aspects is a measure of gene-duplications that is fully evidence-based, resting upon gDNA coverage depth analyses, for unique conserved, 1-copy genes, and then all the other genes, and remainder of genome (tranposons, repeats, etc).
This description evigene/docs/evigene_gnodes_help.txt in evigene22jan14.tar should get you started.
evgpipe_sra2genes4v.pl is update to add local cluster 'sra2genes_setup.sh' to pipeline scripts.
Please comment to me/project if you try out Gnodes, evident...@googlegroups.com or gilb...@indiana.edu If you have problems with it, they will be fixed as soon as possible.
Gnodes is a measuring tool for both chromosome assemblies and the genes there-in, and RNA-assembled genes. One of its most useful aspects is a measure of gene-duplications that is fully evidence-based, resting upon gDNA coverage depth analyses, for unique conserved, 1-copy genes, and then all the other genes, and remainder of genome (tranposons, repeats, etc).
This description evigene/docs/evigene_gnodes_help.txt in evigene22jan14.tar should get you started.
evgpipe_sra2genes4v.pl is update to add local cluster 'sra2genes_setup.sh' to pipeline scripts.
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