Converting blast tabular results in gff3

[Ana Nascimento]

Anyone know how to convert blast tabular results in gff3 format?

[Brian Haas]

Hi Ana,

For incorporating protein alignment data, you should use a spliced protein aligner such as exonerate, genewise, AAT, or other.  Blast will help identify exons that have homology but it's not going to help to get the introns right nor define exon features themselves.

best,

~brian

On Wed, Apr 26, 2017 at 3:38 PM, Ana Nascimento <ana...@gmail.com> wrote:

Anyone know how to convert blast tabular results in gff3 format?

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Brian J. Haas
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[Ana Nascimento]

ty :)

Em quarta-feira, 26 de abril de 2017 21:07:06 UTC-3, Brian Haas escreveu:

Hi Ana,

For incorporating protein alignment data, you should use a spliced protein aligner such as exonerate, genewise, AAT, or other.  Blast will help identify exons that have homology but it's not going to help to get the introns right nor define exon features themselves.

best,

~brian

On Wed, Apr 26, 2017 at 3:38 PM, Ana Nascimento <ana...@gmail.com> wrote:

Anyone know how to convert blast tabular results in gff3 format?

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