write_EVM_commands.pl

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kevin wang

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Mar 31, 2023, 9:37:25 AM3/31/23

to EVidenceModeler-users

perl ~/micromamba/envs/work/opt/evidencemodeler1.1.1/EvmUtils/write_EVM_commands.pl --genome V991.rawchrom.FINAL.fasta --weights `pwd`/weights.txt --gene_predictions Repeat_zhushi/RepeatMasker/Gene_zhushi/De-novo_zhushi/V991-rep2.gff3 --protein_alignments Braker/braker/braker.gff3 -transcript_alignments Braker/transcripts.fasta.transdecoder.genome.gff3 --output_file_name V991_final2.out --partitions partition_EVM_inputs.out >commands.list

When I use this software package, I find that there are no other problems with this problem. What is the reason?

Brian Haas

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Mar 31, 2023, 9:47:16 AM3/31/23

to kevin wang, EVidenceModeler-users

Hi,

It looks like it's not finding the file: partition_EVM_inputs.out

perhaps you missed an earlier step.

Note, we have a new release for EVM that makes it much easier to run:
https://github.com/EVidenceModeler/EVidenceModeler/releases/tag/EVidenceModeler-v2.0.0

I encourage you to try this version.

best,

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