question regarding contact_maps output

[afonso...@gmail.com]

Dear all,

I just got the results from a first evfold run. As input I have a 333 aa residues protein. When I look at the contact_maps results the map is starting from residue ~70 and finishing at residue ~450, why the change in residue number? Or am I looking at the results in the wrong way? Is there a spot where I can find the correlation between the original aa numbering and the one used in the contact_maps?

Thanks !

PS: Congrats for the very nice and functional website!

Afonso

[phatma...@gmail.com]

I too am wondering about the contact maps output. For my protein, 330 in length, all the contact maps are in a specific region, but if I draw my own contacts in order of covariance score from XXX_CouplingScores.csv, I get different contacts from those indicated in the XXX_draw_EC_lines.pml script.

How are the residues for the EC lines calculated? Is the raw data tabulated somewhere for this?

Thanks,
Matt.

[fran...@gmail.com]

Same issue... but it looks like nobody is taking care to reply...

F