EVCouplings

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Welcome to EVCouplings google group and we'd love to hear from you!
Please feel free to post any feedback, suggestions or questions here below,

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Thank you for your support for EVCouplings.

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Archishman Dakua

5/16/24

Error message while using EV complex

Whenever I'm trying to submit a job to EV complex, I'm geting the following error: {"

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Error message while using EV complex

Whenever I'm trying to submit a job to EV complex, I'm geting the following error: {"

5/16/24

6/21/23

EVmutation

Hello, I would like to use EVcouplings to calculate the ΔE for 8000 variants in 1400 different

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EVmutation

Hello, I would like to use EVcouplings to calculate the ΔE for 8000 variants in 1400 different

6/21/23

maj...@gmail.com

5/13/19

issue with "image view" tab

I am a user of EVfold (online server) and I am experiencing the following issues: - I ran the new

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issue with "image view" tab

I am a user of EVfold (online server) and I am experiencing the following issues: - I ran the new

5/13/19

shivakumar....@quantumzyme.com

3/27/19

EV coupling not working

I am trying to get an EV coupling score from my amino acid sequence but I am not able to get EV

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EV coupling not working

I am trying to get an EV coupling score from my amino acid sequence but I am not able to get EV

3/27/19

karthikv...@gmail.com

9/4/18

Evcomplex

Hi, EVcomplex is off for a while. When will the service be back on? Thanks Karthik

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Evcomplex

Hi, EVcomplex is off for a while. When will the service be back on? Thanks Karthik

9/4/18

gioroz...@gmail.com

8/17/18

EV folding with PCBP1_HUMAN

Hi everyone, We tried to fold PCBP1_HUMAN using the online server. The original sequence was

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EV folding with PCBP1_HUMAN

Hi everyone, We tried to fold PCBP1_HUMAN using the online server. The original sequence was

8/17/18

fran...@gmail.com, … voy...@gmail.com4

4/21/17

progress stopped in : mapping indices

For those of you encountering this error, check the sequence of your PDB relative to your reference

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progress stopped in : mapping indices

For those of you encountering this error, check the sequence of your PDB relative to your reference

4/21/17

dabu...@gmail.com

5/19/16

EVcomplex stand-alone

Hi everyone. I am interested in inferring inter-protein co-evolution between quite a lot protein

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EVcomplex stand-alone

Hi everyone. I am interested in inferring inter-protein co-evolution between quite a lot protein

5/19/16

afonso...@gmail.com, … fran...@gmail.com3

5/4/16

question regarding contact_maps output

Same issue... but it looks like nobody is taking care to reply... F

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question regarding contact_maps output

Same issue... but it looks like nobody is taking care to reply... F

5/4/16

mane...@gmail.com

2/26/16

Folding rbcL (the large subunit of Rubisco)

Hello, Did somebody try to fold rbcL with EVCouplings? Rubisco is a highly conserved enzyme (sequence

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Folding rbcL (the large subunit of Rubisco)

Hello, Did somebody try to fold rbcL with EVCouplings? Rubisco is a highly conserved enzyme (sequence

2/26/16

disch...@gmail.com

8/12/15

Use with unpublished structure

I see the option in EVcouplings to map results onto a structure already assigned a PDB code. Is there

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Use with unpublished structure

I see the option in EVcouplings to map results onto a structure already assigned a PDB code. Is there

8/12/15

marina.g.g...@gmail.com, iyue...@gmail.com2

6/12/15

EV complex

Yes, I also would like to know it. When will EVcomplex be availabe?

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EV complex

Yes, I also would like to know it. When will EVcomplex be availabe?

6/12/15

marina.g.g...@gmail.com

5/5/15

uploading an allignment in FASTA format

Hello, I have an allignment file that I want to use to calculate EVcouplings scores.When I run

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uploading an allignment in FASTA format

Hello, I have an allignment file that I want to use to calculate EVcouplings scores.When I run

5/5/15

umutg...@gmail.com

2/9/15

Can we enter some contact sites which we are sure about?

Hello, I am trying to use EVfold for a membrane protein. In the program, it finds the ECs and then

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Can we enter some contact sites which we are sure about?

Hello, I am trying to use EVfold for a membrane protein. In the program, it finds the ECs and then

2/9/15

afonso...@gmail.com, armi...@gmail.com3

11/6/14

question regarding the upload of a FASTA alignment file

Hello, Has the been solved? I am experiencing the same problem. Thanks, Armin

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question regarding the upload of a FASTA alignment file

Hello, Has the been solved? I am experiencing the same problem. Thanks, Armin

11/6/14

a.vaitin...@gmail.com

10/16/14

Databases used by EvFold.

Hello, I'm triying to repoduce the results obtain by the authors with URAA_ECOLI. But I'm not

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Databases used by EvFold.

Hello, I'm triying to repoduce the results obtain by the authors with URAA_ECOLI. But I'm not

10/16/14

alfred...@gmail.com

5/15/14

Upload MSA to EVcoupling

Hi all, I have a question about uploading MSA to EVcouplings. I used a custom-made MSA containing 660

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Upload MSA to EVcoupling

Hi all, I have a question about uploading MSA to EVcouplings. I used a custom-made MSA containing 660

5/15/14

eabe...@gmail.com

2/21/14

Evolutionary couplings between interacting proteins

Does it make sense to use coevolution to identify interacting residues in two different proteins?

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Evolutionary couplings between interacting proteins

Does it make sense to use coevolution to identify interacting residues in two different proteins?

2/21/14

phatma...@gmail.com

12/20/13

Parameters for EVCouplings Jackhmmer search

I'm trying to understand how evfold generates its set of sequences consulting either HHblits or

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Parameters for EVCouplings Jackhmmer search

I'm trying to understand how evfold generates its set of sequences consulting either HHblits or

12/20/13

afonso...@gmail.com

10/30/13

how to interpret the different Contact Maps and Hot spot table

Dear All, I've been using the Evfold website and getting some interesting data out, in order to

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how to interpret the different Contact Maps and Hot spot table

Dear All, I've been using the Evfold website and getting some interesting data out, in order to

10/30/13

a.k...@herts.ac.uk, andrea...@gmail.com2

9/3/13

Upload alignment

Hello, The problem remains, eg see the following job-id: 4b335fc0-8c0c-4b9a-854c-b23fdd4492b1 Many

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Upload alignment

Hello, The problem remains, eg see the following job-id: 4b335fc0-8c0c-4b9a-854c-b23fdd4492b1 Many

9/3/13

dieg...@gmail.com

6/28/13

Can EVcouplings be run on Octave ?

Hi! I didn't have a MATLAB, so I tried to running it on Octave. I was running it in this way:

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Can EVcouplings be run on Octave ?

Hi! I didn't have a MATLAB, so I tried to running it on Octave. I was running it in this way:

6/28/13

peters.m...@gmail.com

4/8/13

Empty structures for transmembrane protein

Thanks a lot for putting up the server! I tried to get a model for an ion channel, initially only the

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Empty structures for transmembrane protein

Thanks a lot for putting up the server! I tried to get a model for an ion channel, initially only the

4/8/13

debor...@gmail.com

12/18/12

Great stuff team-evo

it works - and its been mega useful to me this week!

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Great stuff team-evo

it works - and its been mega useful to me this week!

12/18/12