I haven't looked at bode plots or laplace transforms since undergrad, but you might be able to do some simple ones by modeling frequency as a function of the phase, or vice versa. If you have phase data t and frequency data s, model:
s = f(t)
Eureqa doesn't yet have an integral operator, but it does have a derivative operator, so you could do:
D(s, t) = f(t)
You could also try a more general approach like:
f0(s) = f1(t)
to search for more general transformations if your data is continuous and smoothed.