problems for run ete3 after installed in ubuntu

[Ivanna Tomasco]

Hello to everybody! I hope everything is fine!
I think I managed to install ete toolkit on ubuntu
But I'm trying to see if it's installed, and I get this error.
I don't have much experience with ubuntu
thank you very much in advance

Ivanna

ivanna@Ivanna-tomasco:~$ ete3 "((A,B),C);"

Traceback (most recent call last):
 File "/home/ivanna/.local/bin/ete3", line 7, in <module>
    from ete3.tools.ete import main
  File "/home/ivanna/.local/lib/python2.7/site-packages/ete3/tools/ete.py", line 55, in <module>
    from . import (ete_split, ete_expand, ete_annotate, ete_ncbiquery, ete_view,
  File "/home/ivanna/.local/lib/python2.7/site-packages/ete3/tools/ete_view.py", line 48, in <module>
    from .. import (Tree, PhyloTree, TextFace, RectFace, faces, TreeStyle, CircleFace, AttrFace,
ImportError: cannot import name TextFace

[Jaime Huerta Cepas]

Hi Ivanna, 

you are most probably missing some dependencies like Qt and PyQt. 

Also, you will need to specify a subcommand. For instance, 

ete3 view -t "(A, B);" 

best

-jaime

--
You received this message because you are subscribed to the Google Groups "The ETE toolkit" group.
To unsubscribe from this group and stop receiving emails from it, send an email to etetoolkit+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/etetoolkit/3ac11ec8-79c0-48f4-99c7-b241bf9d8b75n%40googlegroups.com.

[Ivanna Tomasco]

Thank you!

I do not know how to solve the problem..

Today I tried to did all again...  following this instruction given in: http://etetoolkit.org/download (Installing ETE using the Anaconda/Miniconda environment).

Everything worked, but when I put: ete3 build check

the following error message appeared:

Traceback (most recent call last):
  File "/home/ivanna/.local/bin/ete3", line 7, in <module>
    from ete3.tools.ete import main
  File "/home/ivanna/.local/lib/python2.7/site-packages/ete3/tools/ete.py", line 55, in <module>
    from . import (ete_split, ete_expand, ete_annotate, ete_ncbiquery, ete_view,
  File "/home/ivanna/.local/lib/python2.7/site-packages/ete3/tools/ete_view.py", line 48, in <module>
    from .. import (Tree, PhyloTree, TextFace, RectFace, faces, TreeStyle, CircleFace, AttrFace,
ImportError: cannot import name TextFace

it is the same error than before...

could anyone help, please?

best

Ivanna

[dengzi...@gmail.com]

Hi,

this error is caused by the lack of PyQt of Qt in your environment.

For conda environment, you could try

`conda install -c anaconda pyqt` 

to install this package

best,

Ziqi

[Ivanna Tomasco]

Thank you very much!

I tried this, and the PyQt was installed. But, after that, the error message is the same. :-(

Traceback (most recent call last):
  File "/home/ivanna/.local/bin/ete3", line 7, in <module>
    from ete3.tools.ete import main
  File "/home/ivanna/.local/lib/python2.7/site-packages/ete3/tools/ete.py", line 55, in <module>
    from . import (ete_split, ete_expand, ete_annotate, ete_ncbiquery, ete_view,
  File "/home/ivanna/.local/lib/python2.7/site-packages/ete3/tools/ete_view.py", line 48, in <module>
    from .. import (Tree, PhyloTree, TextFace, RectFace, faces, TreeStyle, CircleFace, AttrFace,
ImportError: cannot import name TextFace

Any other ideas to solve the problem?
I really appreciate the help because i don't have any experience with linux.

best,

Ivanna

You received this message because you are subscribed to a topic in the Google Groups "The ETE toolkit" group.
To unsubscribe from this topic, visit https://groups.google.com/d/topic/etetoolkit/iYeX7DfVDiM/unsubscribe.
To unsubscribe from this group and all its topics, send an email to etetoolkit+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/etetoolkit/b5218f25-2953-4013-bcc9-1794e34335a2n%40googlegroups.com.

--

Ivanna H. Tomasco
Asistente del Laboratorio de Evolución

Departamento de Ecología y Evolución
Facultad de  Ciencias
Universidad de la República
Iguá 4225, Montevideo 11400
Tels: (598) 2525 8618 ext. 7143
Fax: (598) 2525 8617
http://evolucion.fcien.edu.uy
http://evolucion.fcien.edu.uy/ivanna/ivanna.htm

[Ivanna Tomasco]

I think that now the problem is that I could not install the PyQt

I read the message> Found conflicts! Looking for incompatible packages.

I will try update python, etc.. and then I will try again.

best,

Ivanna

[Ivanna Tomasco]

I found that my python is 3.8, and specifications compatible for etetools are de following:

speficications  - ete_toolchain -> python[version='>=2.7,<2.8.0a0|>=3.4,<3.5.0a0|>=3.5,<3.6.0a0|>=3.6,<3.7.0a0']

I understand that I need to get an older version of python? is it correct? How can I do?

best,

Ivanna

To view this discussion on the web visit https://groups.google.com/d/msgid/etetoolkit/070154c0-084e-4840-9eb7-0b413a22d6abn%40googlegroups.com.