Visualization of phylogenetic trees

[sunny kevin]

Hi Ziqi,

Trying to plot the sequence alignment as per manual, code from the provided example.

I'm getting this "ValueError: Algorithm can only work with binary trees"

How do I solve this problem?

Suggestions appreciated

I labeled the species name (ex. Aven_001)

I attached the file PFA.

Best,

Sunny

Traceback (most recent call last):
  File "align1.py", line 49, in <module>
    t, ts = get_example_tree()
  File "align1.py", line 43, in get_example_tree
    recon_tree, events = genetree.reconcile(sptree)
  File "/home/sunn/data/softwares/ete-3.1.2/ete3/phylo/phylotree.py", line 479, in reconcile
    return get_reconciled_tree(self, species_tree, [])
  File "/home/sunn/data/softwares/ete-3.1.2/ete3/phylo/reconciliation.py", line 108, in get_reconciled_tree
    raise ValueError("Algorithm can only work with binary trees.")
ValueError: Algorithm can only work with binary trees.