Annotating genomic location of CpG sites

53 views
Skip to first unread message

Candace Lewis

unread,
Aug 13, 2018, 5:09:23 PM8/13/18
to Epigenomics forum
I am currently using the IlluminaHumanMethylationEPICanno to annotate my CpG sites with their nearest gene and their genome location. With that information in hand, I then use genome browser to determine if the location of the CpG site is within intronic, exonin, promoter, UTRs, etc regions. This is really labor intensive. Does anyone know of a package or a way I can pull this information for specific illumina CpG loci? Thank you in advance!
Reply all
Reply to author
Forward
0 new messages