LOLA error

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Nadezh

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Mar 6, 2020, 4:21:39 AM3/6/20
to Epigenomics forum
Hi!

I am trying to run LOLA analysis for some of my samples but I cannot do it...
This is the message that appears..


2020-03-05 23:29:45    12.0  STATUS             STARTED Downloading LOLA databases
2020-03-05 23:29:46    12.0  STATUS                 STARTED Downloading from http://cloud.databio.org.s3.amazonaws.com/regiondb/LOLACoreCaches_170206.tgz
trying URL 'http://cloud.databio.org.s3.amazonaws.com/regiondb/LOLACoreCaches_170206.tgz'
Content type 'text/html; charset=UTF-8' length 294 bytes
downloaded 294 bytes

tar.exe: Error opening archive: Unrecognized archive format
2020-03-05 23:29:47    12.0   ERROR                     Downloaded archive does not contain a subdirectory LOLACore
Error in logger.error(c("Downloaded archive does not contain a subdirectory",  : 
  Downloaded archive does not contain a subdirectory LOLACore
In addition: There were 50 or more warnings (use warnings() to see the first 50)

Michael Scherer

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Mar 6, 2020, 8:35:25 AM3/6/20
to Epigenomics forum

Dear Nadezhda,


From the output you provided, I cannot certainly judge what the issue is, and can only speculate: Have you installed the "simpleCache" R-package? Otherwise, it looks as if you R-version does not have the capability to extract tar files.


To help you further, I would need more information by showing the output of sessionInfo()


Best,


Michael
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