Annotation on GRCh38?

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Elaine L

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Jun 26, 2024, 1:09:26 AMJun 26
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I am trying to annotate my VCF files on build38, but I have trouble creating the Gene prediction file in UCSC refGene format. I did download the Gencode's lastest file in GTF version, but it seems like that it is not in the same format as the hg19_gencodeV14.txt.gz. How could I recode the GTF or GFF3 to match the format that EPACTS requires? Thank you!

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