epacts spa2 error,

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Vinodh Srinivasan

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Jun 2, 2020, 11:30:08 AM6/2/20
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Hi,

When running epacts single-varaint spa2 module, i am hitting a road block. Any pointers will be helpful.

Detected phenotypes with 2 unique values - 0 and 1 - considering them as binary phenotypes... re-encoding them into 1 and 2

Successfully written phenotypes and 11 covariates across 294694 individuals

Processing chromosome 7...

Loading required package: epactsR

Loading required package: epactsR

Loading required package: epactsR

Loading required package: epactsR

Loading required package: epactsR

Error in obj.SA.null$XV %*% G : non-conformable arguments

Calls: func -> ScoreTest_wSaddleApprox_NewNR

Execution halted

make: *** spa2/test_output_file_chr7.7.114200000.120000000.epacts] Error 1

Error in running make -f spa2/test_output_file_chr7.Makefile -j 10. Exit code is 2

 

vinodh

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