Should we run genes and pathways separately

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Wang Yu

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Dec 4, 2019, 3:37:57 PM12/4/19
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Hi EPACTS developers and users,

I am running the epacts with about 10K genes and ~200 groups (pathways). My question is: should we separately run genes and groups because the group number is big. In another way, will adding more groups affect the pvalue of each genes, OR gene will affect the p-value of each groups. 

Thanks,
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