output information of EPACTS group-wise burden test

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lisha zhu

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May 6, 2020, 11:49:02 AM5/6/20
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Hi all,

I have a question about the EPACTS group-wise burden test, the output files contains several columns:

#CHROMBEGINENDMARKER_IDNS FRAC_WITH_RARE    NUM_ALL_VARS     NUM_PASS_VARS    NUM_SING_VARS   PVALUESTAT

Is it possible for me to obtain the detail information about the NUM_PASS_VARS, NUM_SING_VARS? That is to say to obtain the location or SNP number of those variates passing the filtering.

Thanks.


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