Trouble Downloading Enzo on my MacOS
Brady Call
Last login: Sat Apr 6 10:59:44 on ttys000
williambradycall@Williams-MacBook-Air ~ % git clone https://github.com/enzo-project/enzo-dev
Cloning into 'enzo-dev'...
remote: Enumerating objects: 52854, done.
remote: Counting objects: 100% (12714/12714), done.
remote: Compressing objects: 100% (3722/3722), done.
Receiving objects: 100% (52854/52854), 141.70 MiB | 315.00 KiB/s, done.
remote: Total 52854 (delta 12432), reused 9024 (delta 8978), pack-reused 40140
Resolving deltas: 100% (16914/16914), done.
williambradycall@Williams-MacBook-Air ~ % cd /Users/williambradycall/enzo-dev
williambradycall@Williams-MacBook-Air enzo-dev % ./configure
Configure complete.
williambradycall@Williams-MacBook-Air enzo-dev % cd src/enzo
williambradycall@Williams-MacBook-Air enzo % gmake clean
williambradycall@Williams-MacBook-Air enzo % make clean
williambradycall@Williams-MacBook-Air enzo % make machine-darwin
*** Execute 'gmake clean' before rebuilding executables ***
MACHINE: Darwin (OSX Leopard)
MACHINE-NAME: darwin
williambradycall@Williams-MacBook-Air enzo % make show-config
MACHINE: Darwin (OSX Leopard)
MACHINE-NAME: darwin
PARAMETER_MAX_SUBGRIDS [max-subgrids-###] : 100000
PARAMETER_MAX_BARYONS [max-baryons-###] : 30
PARAMETER_MAX_TASKS_PER_NODE [max-tasks-per-node-###] : 8
PARAMETER_MEMORY_POOL_SIZE [memory-pool-###] : 100000
CONFIG_PRECISION [precision-{32,64}] : 64
CONFIG_PARTICLES [particles-{32,64,128}] : 64
CONFIG_INTEGERS [integers-{32,64}] : 64
CONFIG_PARTICLE_IDS [particle-id-{32,64}] : 64
CONFIG_INITS [inits-{32,64}] : 64
CONFIG_IO [io-{32,64}] : 32
CONFIG_USE_MPI [use-mpi-{yes,no}] : yes
CONFIG_TASKMAP [taskmap-{yes,no}] : no
CONFIG_PACKED_AMR [packed-amr-{yes,no}] : yes
CONFIG_PACKED_MEM [packed-mem-{yes,no}] : no
CONFIG_LCAPERF [lcaperf-{yes,no}] : no
CONFIG_PAPI [papi-{yes,no}] : no
CONFIG_PYTHON [python-{yes,no}] : no
CONFIG_NEW_PROBLEM_TYPES [new-problem-types-{yes,no}] : no
CONFIG_ECUDA [cuda-{yes,no}] : no
CONFIG_OOC_BOUNDARY [ooc-boundary-{yes,no}] : no
CONFIG_ACCELERATION_BOUNDARY [acceleration-boundary-{yes,no}] : yes
CONFIG_OPT [opt-{warn,debug,cudadebug,high,aggressive}] : debug
CONFIG_TESTING [testing-{yes,no}] : no
CONFIG_PHOTON [photon-{yes,no}] : yes
CONFIG_HYPRE [hypre-{yes,no}] : no
CONFIG_EMISSIVITY [emissivity-{yes,no}] : no
CONFIG_USE_HDF4 [use-hdf4-{yes,no}] : no
CONFIG_NEW_GRID_IO [newgridio-{yes,no}] : yes
CONFIG_BITWISE_IDENTICALITY [bitwise-{yes,no}] : no
CONFIG_FAST_SIB [fastsib-{yes,no}] : yes
CONFIG_GRAVITY_4S [gravity-4s-{yes,no}] : no
CONFIG_ENZO_PERFORMANCE [enzo-performance-{yes,no}] : yes
CONFIG_GRACKLE [grackle-{yes,no}] : no
CONFIG_LOG2ALLOC [log2alloc-{yes,no}] : no
CONFIG_UUID [uuid-{yes,no}] : yes
williambradycall@Williams-MacBook-Air enzo % make
-e
Updating DEPEND
make: [dep] Error 127 (ignored)
make: [dep] Error 127 (ignored)
make: [dep] Error 127 (ignored)
make: [dep] Error 127 (ignored)
make: [dep] Error 127 (ignored)
make: [dep] Error 127 (ignored)
make: [dep] Error 127 (ignored)
Compiling enzo.C
mpic++ -c -o enzo.o -DLINUX -DH5_USE_16_API -D__max_subgrids=100000 -D__max_baryons=30 -D__max_cpu_per_node=8 -D__memory_pool_size=100000 -DINITS64 -DLARGE_INTS -DCONFIG_PINT_8 -DIO_32 -DUSE_MPI -DCONFIG_PFLOAT_8 -DCONFIG_BFLOAT_8 -DUSE_HDF5_GROUPS -DTRANSFER -DNEW_GRID_IO -DFAST_SIB -DENZO_PERFORMANCE -DUSE_UUID -DSAB -g -I/include -I/Developer/CUDA/common/inc -I/usr/local/include -I. enzo.C
In file included from enzo.C:30:
./EnzoTiming.h:209:7: warning: 'sprintf' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead. [-Wdeprecated-declarations]
sprintf(level_name, "Level_%02d", level);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:180:1: note: 'sprintf' has been explicitly marked deprecated here
__deprecated_msg("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of sprintf(3), it is highly recommended that you use snprintf(3) instead.")
^
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:218:48: note: expanded from macro '__deprecated_msg'
#define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
^
In file included from enzo.C:34:
In file included from ./typedefs.h:16:
./EquilibriumTable.h:5:1: warning: '/*' within block comment [-Wcomment]
/*****************************************/
^
In file included from enzo.C:41:
In file included from ./Grid.h:20:
./AMRH5writer.h:24:10: fatal error: 'hdf5.h' file not found
#include <hdf5.h>
^~~~~~~~
2 warnings and 1 error generated.
make: *** [enzo.o] Error 1
williambradycall@Williams-MacBook-Air enzo %
John Wise
From your error message (last line is the relevant), you are missing one of the dependencies, HDF5, which Enzo uses for I/O.
https://enzo.readthedocs.io/en/latest/user_guide/building_enzo.html
You should install it with your preferred package manager (e.g. homebrew), adjust the machine file, and try to compile again.
John
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-- John Wise Director, Center for Relativistic Astrophysics Professor, School of Physics Georgia Institute of Technology https://cosmo.gatech.edu