Installation Problem

[David Haselbach]

Hi,

I am trying to install spring on my Ubuntu 16 machine but I am getting the following output.

==================================================================================

 ---------------------- Running binary_install_linux.sh --------------------------

This script will quickly install Spring from binary. Once you move the binaries 

you will need to re-run the script in the new location for it work.

==================================================================================

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Check pre-requisites: whether current directory is a Spring build directory.

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Perform install by re-instating virtualenv and buildout environment.

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New python executable in ./bin/python

Installing setuptools..............done.

Installing pip..............done.

/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/setuptools-36.2.5-py2.7.egg/pkg_resources/__init__.py:187: RuntimeWarning: You have iterated over the result of pkg_resources.parse_version. This is a legacy behavior which is inconsistent with the new version class introduced in setuptools 8.0. In most cases, conversion to a tuple is unnecessary. For comparison of versions, sort the Version instances directly. If you have another use case requiring the tuple, please file a bug with the setuptools project describing that need.

Creating directory '/home/dhaselb/Downloads/spring_v0-84-1470/develop-eggs'.

Installing springpython.

Getting distribution for 'scipy'.

/tmp/easy_install-4gq9sx/scipy-0.19.1/setup.py:323: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates

  warnings.warn("Unrecognized setuptools command, proceeding with "

/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/numpy/distutils/system_info.py:581: UserWarning: Specified path /struct/sachse/casa/08_python/spring_v0-84-1470/parts/lapack is invalid.

  warnings.warn('Specified path %s is invalid.' % d)

/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/numpy/distutils/system_info.py:581: UserWarning: Specified path /struct/sachse/casa/08_python/spring_v0-84-1470/parts/blas is invalid.

  warnings.warn('Specified path %s is invalid.' % d)

/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/numpy/distutils/system_info.py:1432: UserWarning: 

    Atlas (http://math-atlas.sourceforge.net/) libraries not found.

    Directories to search for the libraries can be specified in the

    numpy/distutils/site.cfg file (section [atlas]) or by setting

    the ATLAS environment variable.

  warnings.warn(AtlasNotFoundError.__doc__)

/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/numpy/distutils/system_info.py:1443: UserWarning: 

    Lapack (http://www.netlib.org/lapack/) libraries not found.

    Directories to search for the libraries can be specified in the

    numpy/distutils/site.cfg file (section [lapack]) or by setting

    the LAPACK environment variable.

  warnings.warn(LapackNotFoundError.__doc__)

/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/numpy/distutils/system_info.py:1446: UserWarning: 

    Lapack (http://www.netlib.org/lapack/) sources not found.

    Directories to search for the sources can be specified in the

    numpy/distutils/site.cfg file (section [lapack_src]) or by setting

    the LAPACK_SRC environment variable.

  warnings.warn(LapackSrcNotFoundError.__doc__)

Running from scipy source directory.

non-existing path in 'scipy/integrate': 'quadpack.h'

error: no lapack/blas resources found

An error occurred when trying to install /tmp/tmpPVR6M6get_dist/scipy-0.19.1.tar.gz. Look above this message for any errors that were output by easy_install.

While:

  Installing springpython.

  Getting distribution for 'scipy'.

An internal error occurred due to a bug in either zc.buildout or in a

recipe being used:

Traceback (most recent call last):

  File "/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/zc.buildout-2.9.4-py2.7.egg/zc/buildout/buildout.py", line 2123, in main

    getattr(buildout, command)(args)

  File "/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/zc.buildout-2.9.4-py2.7.egg/zc/buildout/buildout.py", line 796, in install

    installed_files = self[part]._call(recipe.install)

  File "/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/zc.buildout-2.9.4-py2.7.egg/zc/buildout/buildout.py", line 1553, in _call

    return f()

  File "/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/zc.recipe.egg-2.0.3-py2.7.egg/zc/recipe/egg/egg.py", line 126, in install

    reqs, ws = self.working_set()

  File "/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/zc.recipe.egg-2.0.3-py2.7.egg/zc/recipe/egg/egg.py", line 84, in working_set

    allow_hosts=self.allow_hosts)

  File "/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/zc.buildout-2.9.4-py2.7.egg/zc/buildout/easy_install.py", line 913, in install

    return installer.install(specs, working_set)

  File "/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/zc.buildout-2.9.4-py2.7.egg/zc/buildout/easy_install.py", line 714, in install

    for dist in self._get_dist(req, ws):

  File "/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/zc.buildout-2.9.4-py2.7.egg/zc/buildout/easy_install.py", line 563, in _get_dist

    dists = [_move_to_eggs_dir_and_compile(dist, self._dest)]

  File "/home/dhaselb/Downloads/spring_v0-84-1470/lib/python2.7/site-packages/zc.buildout-2.9.4-py2.7.egg/zc/buildout/easy_install.py", line 1699, in _move_to_eggs_dir_and_compile

    [tmp_loc] = glob.glob(os.path.join(tmp_dest, '*'))

ValueError: need more than 0 values to unpack

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Install done. Check whether Spring was successfully installed by brief testing.

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patches/binary_install_linux.sh: 49: patches/binary_install_linux.sh: ./bin/nosetests: not found

==================================================================================

Testing done. If 4 quick tests ran OK Spring was correctly installed.

Install done. Please type to add the following line to your .cshrc:

echo setenv PATH:/home/dhaselb/Downloads/spring_v0-84-1470/bin:$PATH >> ~/.cshrc

or your favorite Bourne shell rc file (e.g. .bashrc, .zshrc):

echo export PATH:/home/dhaselb/Downloads/spring_v0-84-1470/bin:$PATH >> ~/.bashrc

==================================================================================

I have a hard time understanding the error. Has anyone an idea what the problem might be? 

kind regards 

David

[Carsten Sachse]

Dear David,

I will post a Spring update to the installation problem very soon. For those who have issues installing Spring I will send you a temporary fix.

Best wishes,

Carsten