Segrefine3dgrid error

[Carsten Sachse]

Dear Venkata,

I have one guess: 
Based on your entered class selections you have excluded about 70 % of your segments (4765 of 6698). Removing this many segments is likely to results in very discontinuous coverage of your helices. As a result, SPRING will throw error messages because it cannot make use of the helical averaging anymore. I would not exclude so many classes. As an alternative, you could identify the helix ids and throw out helices that you want to get rid of. This way, the helical continuity should not be affected.

Best wishes,


Carsten 

On Thursday, January 9, 2014 3:27:50 PM UTC+1, Venkata Prasad Dandey wrote:

Dear Carsten,

I have attached again the report.log from the sub directory. I checked it and unable to find the cause of this error. 

Please check it once again.

regards,
venkata dandey








On Thursday, January 9, 2014 1:38:42 PM UTC+1, Carsten Sachse wrote:

Dear Venkata,

According to your report.log you should check the output of the report.log from the last subdirectory that was running. Could you check in there to get some clues?

Best wishes,


Carsten
PS Please reply to this email by posting on the google group
On 8 Jan 2014, at 12:04, venkata prasad dandey <Venkata...@unibas.ch> wrote:

The Segmentrefine3D worked well and then when I tried Segrefine3Dgrid, it gives the below error. These are last few lines of the error.. I have attached the report.log


 File "/local0/scratch/Softwares/csachse-emspring-e5d6cdf38e56/parts/EMAN2/lib/EMAN2db.py", line 102, in DB_cleanup
    sys.stderr.flush()
AttributeError: 'MultiCaster' object has no attribute 'flush'



regards,

venkat