Skip to first unread message
Сергей Назаров
Jun 25, 2014, 12:35:29 PM6/25/14
to emsp...@googlegroups.com
Hello,
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=12.04
DISTRIB_CODENAME=precise
DISTRIB_DESCRIPTION="Ubuntu 12.04.4 LTS"
NAME="Ubuntu"
VERSION="12.04.4 LTS, Precise Pangolin"
ID=ubuntu
ID_LIKE=debian
PRETTY_NAME="Ubuntu precise (12.04.4 LTS)"
VERSION_ID="12.04"
There is another (different from what already been posted) installation problem:
% PYTHONPATH=$PWD/lib/python2.7/site-packages LD_LIBRARY_PATH=$PWD/parts/EMAN2/lib ./bin/python patches/ez_setup.py
Extracting in /tmp/tmppjjTiR
Now working in /tmp/tmppjjTiR/setuptools-3.0.2
Installing Setuptools
running install
running bdist_egg
running egg_info
writing requirements to setuptools.egg-info/requires.txt
writing setuptools.egg-info/PKG-INFO
writing top-level names to setuptools.egg-info/top_level.txt
writing dependency_links to setuptools.egg-info/dependency_links.txt
writing entry points to setuptools.egg-info/entry_points.txt
reading manifest file 'setuptools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'setuptools.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
copying pkg_resources.py -> build/lib
copying easy_install.py -> build/lib
creating build/lib/setuptools
copying setuptools/extension.py -> build/lib/setuptools
copying setuptools/dist.py -> build/lib/setuptools
copying setuptools/compat.py -> build/lib/setuptools
copying setuptools/ssl_support.py -> build/lib/setuptools
copying setuptools/script template (dev).py -> build/lib/setuptools
copying setuptools/package_index.py -> build/lib/setuptools
copying setuptools/archive_util.py -> build/lib/setuptools
copying setuptools/version.py -> build/lib/setuptools
copying setuptools/script template.py -> build/lib/setuptools
copying setuptools/py26compat.py -> build/lib/setuptools
copying setuptools/py27compat.py -> build/lib/setuptools
copying setuptools/__init__.py -> build/lib/setuptools
copying setuptools/py31compat.py -> build/lib/setuptools
copying setuptools/svn_utils.py -> build/lib/setuptools
copying setuptools/lib2to3_ex.py -> build/lib/setuptools
copying setuptools/depends.py -> build/lib/setuptools
copying setuptools/site-patch.py -> build/lib/setuptools
copying setuptools/sandbox.py -> build/lib/setuptools
creating build/lib/_markerlib
copying _markerlib/__init__.py -> build/lib/_markerlib
copying _markerlib/markers.py -> build/lib/_markerlib
creating build/lib/setuptools/command
copying setuptools/command/bdist_egg.py -> build/lib/setuptools/command
copying setuptools/command/install.py -> build/lib/setuptools/command
copying setuptools/command/egg_info.py -> build/lib/setuptools/command
copying setuptools/command/install_lib.py -> build/lib/setuptools/command
copying setuptools/command/alias.py -> build/lib/setuptools/command
copying setuptools/command/bdist_rpm.py -> build/lib/setuptools/command
copying setuptools/command/install_scripts.py -> build/lib/setuptools/command
copying setuptools/command/rotate.py -> build/lib/setuptools/command
copying setuptools/command/build_py.py -> build/lib/setuptools/command
copying setuptools/command/install_egg_info.py -> build/lib/setuptools/command
copying setuptools/command/test.py -> build/lib/setuptools/command
copying setuptools/command/setopt.py -> build/lib/setuptools/command
copying setuptools/command/develop.py -> build/lib/setuptools/command
copying setuptools/command/easy_install.py -> build/lib/setuptools/command
copying setuptools/command/__init__.py -> build/lib/setuptools/command
copying setuptools/command/bdist_wininst.py -> build/lib/setuptools/command
copying setuptools/command/register.py -> build/lib/setuptools/command
copying setuptools/command/upload_docs.py -> build/lib/setuptools/command
copying setuptools/command/build_ext.py -> build/lib/setuptools/command
copying setuptools/command/sdist.py -> build/lib/setuptools/command
copying setuptools/command/saveopts.py -> build/lib/setuptools/command
creating build/lib/setuptools/tests
copying setuptools/tests/test_dist_info.py -> build/lib/setuptools/tests
copying setuptools/tests/test_build_ext.py -> build/lib/setuptools/tests
copying setuptools/tests/test_resources.py -> build/lib/setuptools/tests
copying setuptools/tests/test_svn.py -> build/lib/setuptools/tests
copying setuptools/tests/test_markerlib.py -> build/lib/setuptools/tests
copying setuptools/tests/test_sandbox.py -> build/lib/setuptools/tests
copying setuptools/tests/doctest.py -> build/lib/setuptools/tests
copying setuptools/tests/py26compat.py -> build/lib/setuptools/tests
copying setuptools/tests/test_sdist.py -> build/lib/setuptools/tests
copying setuptools/tests/test_packageindex.py -> build/lib/setuptools/tests
copying setuptools/tests/environment.py -> build/lib/setuptools/tests
copying setuptools/tests/test_upload_docs.py -> build/lib/setuptools/tests
copying setuptools/tests/script-with-bom.py -> build/lib/setuptools/tests
copying setuptools/tests/__init__.py -> build/lib/setuptools/tests
copying setuptools/tests/test_easy_install.py -> build/lib/setuptools/tests
copying setuptools/tests/test_develop.py -> build/lib/setuptools/tests
copying setuptools/tests/test_test.py -> build/lib/setuptools/tests
copying setuptools/tests/server.py -> build/lib/setuptools/tests
copying setuptools/tests/test_egg_info.py -> build/lib/setuptools/tests
copying setuptools/tests/test_bdist_egg.py -> build/lib/setuptools/tests
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/extension.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/dist.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/compat.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/ssl_support.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/script template (dev).py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/package_index.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/archive_util.py -> build/bdist.linux-x86_64/egg/setuptools
creating build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/bdist_egg.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/egg_info.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install_lib.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/alias.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/bdist_rpm.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install_scripts.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/rotate.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/build_py.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install_egg_info.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/test.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/setopt.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/develop.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/easy_install.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/__init__.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/bdist_wininst.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/register.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/upload_docs.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/build_ext.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/sdist.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/saveopts.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/version.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/script template.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/py26compat.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/py27compat.py -> build/bdist.linux-x86_64/egg/setuptools
creating build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_dist_info.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_build_ext.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_resources.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_svn.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_markerlib.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_sandbox.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/doctest.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/py26compat.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_sdist.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_packageindex.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/environment.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_upload_docs.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/script-with-bom.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/__init__.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_easy_install.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_develop.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_test.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/server.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_egg_info.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_bdist_egg.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/__init__.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/py31compat.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/svn_utils.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/lib2to3_ex.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/depends.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/site-patch.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/sandbox.py -> build/bdist.linux-x86_64/egg/setuptools
creating build/bdist.linux-x86_64/egg/_markerlib
copying build/lib/_markerlib/__init__.py -> build/bdist.linux-x86_64/egg/_markerlib
copying build/lib/_markerlib/markers.py -> build/bdist.linux-x86_64/egg/_markerlib
copying build/lib/easy_install.py -> build/bdist.linux-x86_64/egg
copying build/lib/pkg_resources.py -> build/bdist.linux-x86_64/egg
byte-compiling build/bdist.linux-x86_64/egg/setuptools/extension.py to extension.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/dist.py to dist.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/compat.py to compat.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/ssl_support.py to ssl_support.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/script template (dev).py to script template (dev).pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/package_index.py to package_index.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/archive_util.py to archive_util.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_egg.py to bdist_egg.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install.py to install.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/egg_info.py to egg_info.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_lib.py to install_lib.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/alias.py to alias.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_rpm.py to bdist_rpm.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_scripts.py to install_scripts.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/rotate.py to rotate.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/build_py.py to build_py.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_egg_info.py to install_egg_info.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/test.py to test.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/setopt.py to setopt.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/develop.py to develop.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py to easy_install.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_wininst.py to bdist_wininst.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/register.py to register.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/upload_docs.py to upload_docs.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/build_ext.py to build_ext.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/sdist.py to sdist.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/saveopts.py to saveopts.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/version.py to version.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/script template.py to script template.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/py26compat.py to py26compat.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/py27compat.py to py27compat.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_dist_info.py to test_dist_info.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_build_ext.py to test_build_ext.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_resources.py to test_resources.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_svn.py to test_svn.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_markerlib.py to test_markerlib.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_sandbox.py to test_sandbox.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/doctest.py to doctest.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/py26compat.py to py26compat.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_sdist.py to test_sdist.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_packageindex.py to test_packageindex.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/environment.py to environment.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_upload_docs.py to test_upload_docs.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/script-with-bom.py to script-with-bom.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_easy_install.py to test_easy_install.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_develop.py to test_develop.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_test.py to test_test.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/server.py to server.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_egg_info.py to test_egg_info.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_bdist_egg.py to test_bdist_egg.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/py31compat.py to py31compat.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/svn_utils.py to svn_utils.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/lib2to3_ex.py to lib2to3_ex.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/depends.py to depends.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/site-patch.py to site-patch.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/sandbox.py to sandbox.pyc
byte-compiling build/bdist.linux-x86_64/egg/_markerlib/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/_markerlib/markers.py to markers.pyc
byte-compiling build/bdist.linux-x86_64/egg/easy_install.py to easy_install.pyc
byte-compiling build/bdist.linux-x86_64/egg/pkg_resources.py to pkg_resources.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/entry_points.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO
creating dist
creating 'dist/setuptools-3.0.2-py2.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing setuptools-3.0.2-py2.7.egg
Removing /home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/setuptools-3.0.2-py2.7.egg
Copying setuptools-3.0.2-py2.7.egg to /home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages
Removing setuptools 5.2 from easy-install.pth file
Adding setuptools 3.0.2 to easy-install.pth file
Installing easy_install script to /home/snazarov/csachse-emspring-60a26857113a/bin
Installing easy_install-2.7 script to /home/snazarov/csachse-emspring-60a26857113a/bin
Installed /home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/setuptools-3.0.2-py2.7.egg
Processing dependencies for setuptools==3.0.2
Traceback (most recent call last):
File "setup.py", line 203, in <module>
dist = setuptools.setup(**setup_params)
File "/home/snazarov/csachse-emspring-60a26857113a/parts/EMAN2/Python/lib/python2.7/distutils/core.py", line 152, in setup
dist.run_commands()
File "/home/snazarov/csachse-emspring-60a26857113a/parts/EMAN2/Python/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/home/snazarov/csachse-emspring-60a26857113a/parts/EMAN2/Python/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/install.py", line 74, in run
self.do_egg_install()
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/install.py", line 97, in do_egg_install
cmd.run()
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/easy_install.py", line 358, in run
self.easy_install(spec, not self.no_deps)
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/easy_install.py", line 574, in easy_install
return self.install_item(None, spec, tmpdir, deps, True)
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/easy_install.py", line 625, in install_item
self.process_distribution(spec, dist, deps)
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/easy_install.py", line 671, in process_distribution
[requirement], self.local_index, self.easy_install
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 633, in resolve
requirements.extend(dist.requires(req.extras)[::-1])
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 2291, in requires
dm = self._dep_map
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 2277, in _dep_map
for extra,reqs in split_sections(self._get_metadata(name)):
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 2715, in split_sections
for line in yield_lines(s):
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 1989, in yield_lines
for ss in strs:
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 2305, in _get_metadata
for line in self.get_metadata_lines(name):
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 1369, in get_metadata_lines
return yield_lines(self.get_metadata(name))
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 1361, in get_metadata
return self._get(self._fn(self.egg_info,name))
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 1425, in _get
return self.loader.get_data(path)
zipimport.ZipImportError: bad local file header in /home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/setuptools-3.0.2-py2.7.egg
Something went wrong during the installation.
See the error message above.
Sergey Nazarov
PhD student
Laboratory of biophysics and structural biology
Swiss Federal Institute of Technology, Lausanne
DISTRIB_ID=Ubuntu
DISTRIB_RELEASE=12.04
DISTRIB_CODENAME=precise
DISTRIB_DESCRIPTION="Ubuntu 12.04.4 LTS"
NAME="Ubuntu"
VERSION="12.04.4 LTS, Precise Pangolin"
ID=ubuntu
ID_LIKE=debian
PRETTY_NAME="Ubuntu precise (12.04.4 LTS)"
VERSION_ID="12.04"
There is another (different from what already been posted) installation problem:
% PYTHONPATH=$PWD/lib/python2.7/site-packages LD_LIBRARY_PATH=$PWD/parts/EMAN2/lib ./bin/python patches/ez_setup.py
Extracting in /tmp/tmppjjTiR
Now working in /tmp/tmppjjTiR/setuptools-3.0.2
Installing Setuptools
running install
running bdist_egg
running egg_info
writing requirements to setuptools.egg-info/requires.txt
writing setuptools.egg-info/PKG-INFO
writing top-level names to setuptools.egg-info/top_level.txt
writing dependency_links to setuptools.egg-info/dependency_links.txt
writing entry points to setuptools.egg-info/entry_points.txt
reading manifest file 'setuptools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'setuptools.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
copying pkg_resources.py -> build/lib
copying easy_install.py -> build/lib
creating build/lib/setuptools
copying setuptools/extension.py -> build/lib/setuptools
copying setuptools/dist.py -> build/lib/setuptools
copying setuptools/compat.py -> build/lib/setuptools
copying setuptools/ssl_support.py -> build/lib/setuptools
copying setuptools/script template (dev).py -> build/lib/setuptools
copying setuptools/package_index.py -> build/lib/setuptools
copying setuptools/archive_util.py -> build/lib/setuptools
copying setuptools/version.py -> build/lib/setuptools
copying setuptools/script template.py -> build/lib/setuptools
copying setuptools/py26compat.py -> build/lib/setuptools
copying setuptools/py27compat.py -> build/lib/setuptools
copying setuptools/__init__.py -> build/lib/setuptools
copying setuptools/py31compat.py -> build/lib/setuptools
copying setuptools/svn_utils.py -> build/lib/setuptools
copying setuptools/lib2to3_ex.py -> build/lib/setuptools
copying setuptools/depends.py -> build/lib/setuptools
copying setuptools/site-patch.py -> build/lib/setuptools
copying setuptools/sandbox.py -> build/lib/setuptools
creating build/lib/_markerlib
copying _markerlib/__init__.py -> build/lib/_markerlib
copying _markerlib/markers.py -> build/lib/_markerlib
creating build/lib/setuptools/command
copying setuptools/command/bdist_egg.py -> build/lib/setuptools/command
copying setuptools/command/install.py -> build/lib/setuptools/command
copying setuptools/command/egg_info.py -> build/lib/setuptools/command
copying setuptools/command/install_lib.py -> build/lib/setuptools/command
copying setuptools/command/alias.py -> build/lib/setuptools/command
copying setuptools/command/bdist_rpm.py -> build/lib/setuptools/command
copying setuptools/command/install_scripts.py -> build/lib/setuptools/command
copying setuptools/command/rotate.py -> build/lib/setuptools/command
copying setuptools/command/build_py.py -> build/lib/setuptools/command
copying setuptools/command/install_egg_info.py -> build/lib/setuptools/command
copying setuptools/command/test.py -> build/lib/setuptools/command
copying setuptools/command/setopt.py -> build/lib/setuptools/command
copying setuptools/command/develop.py -> build/lib/setuptools/command
copying setuptools/command/easy_install.py -> build/lib/setuptools/command
copying setuptools/command/__init__.py -> build/lib/setuptools/command
copying setuptools/command/bdist_wininst.py -> build/lib/setuptools/command
copying setuptools/command/register.py -> build/lib/setuptools/command
copying setuptools/command/upload_docs.py -> build/lib/setuptools/command
copying setuptools/command/build_ext.py -> build/lib/setuptools/command
copying setuptools/command/sdist.py -> build/lib/setuptools/command
copying setuptools/command/saveopts.py -> build/lib/setuptools/command
creating build/lib/setuptools/tests
copying setuptools/tests/test_dist_info.py -> build/lib/setuptools/tests
copying setuptools/tests/test_build_ext.py -> build/lib/setuptools/tests
copying setuptools/tests/test_resources.py -> build/lib/setuptools/tests
copying setuptools/tests/test_svn.py -> build/lib/setuptools/tests
copying setuptools/tests/test_markerlib.py -> build/lib/setuptools/tests
copying setuptools/tests/test_sandbox.py -> build/lib/setuptools/tests
copying setuptools/tests/doctest.py -> build/lib/setuptools/tests
copying setuptools/tests/py26compat.py -> build/lib/setuptools/tests
copying setuptools/tests/test_sdist.py -> build/lib/setuptools/tests
copying setuptools/tests/test_packageindex.py -> build/lib/setuptools/tests
copying setuptools/tests/environment.py -> build/lib/setuptools/tests
copying setuptools/tests/test_upload_docs.py -> build/lib/setuptools/tests
copying setuptools/tests/script-with-bom.py -> build/lib/setuptools/tests
copying setuptools/tests/__init__.py -> build/lib/setuptools/tests
copying setuptools/tests/test_easy_install.py -> build/lib/setuptools/tests
copying setuptools/tests/test_develop.py -> build/lib/setuptools/tests
copying setuptools/tests/test_test.py -> build/lib/setuptools/tests
copying setuptools/tests/server.py -> build/lib/setuptools/tests
copying setuptools/tests/test_egg_info.py -> build/lib/setuptools/tests
copying setuptools/tests/test_bdist_egg.py -> build/lib/setuptools/tests
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/extension.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/dist.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/compat.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/ssl_support.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/script template (dev).py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/package_index.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/archive_util.py -> build/bdist.linux-x86_64/egg/setuptools
creating build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/bdist_egg.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/egg_info.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install_lib.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/alias.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/bdist_rpm.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install_scripts.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/rotate.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/build_py.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install_egg_info.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/test.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/setopt.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/develop.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/easy_install.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/__init__.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/bdist_wininst.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/register.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/upload_docs.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/build_ext.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/sdist.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/saveopts.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/version.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/script template.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/py26compat.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/py27compat.py -> build/bdist.linux-x86_64/egg/setuptools
creating build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_dist_info.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_build_ext.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_resources.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_svn.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_markerlib.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_sandbox.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/doctest.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/py26compat.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_sdist.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_packageindex.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/environment.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_upload_docs.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/script-with-bom.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/__init__.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_easy_install.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_develop.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_test.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/server.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_egg_info.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_bdist_egg.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/__init__.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/py31compat.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/svn_utils.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/lib2to3_ex.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/depends.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/site-patch.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/sandbox.py -> build/bdist.linux-x86_64/egg/setuptools
creating build/bdist.linux-x86_64/egg/_markerlib
copying build/lib/_markerlib/__init__.py -> build/bdist.linux-x86_64/egg/_markerlib
copying build/lib/_markerlib/markers.py -> build/bdist.linux-x86_64/egg/_markerlib
copying build/lib/easy_install.py -> build/bdist.linux-x86_64/egg
copying build/lib/pkg_resources.py -> build/bdist.linux-x86_64/egg
byte-compiling build/bdist.linux-x86_64/egg/setuptools/extension.py to extension.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/dist.py to dist.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/compat.py to compat.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/ssl_support.py to ssl_support.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/script template (dev).py to script template (dev).pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/package_index.py to package_index.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/archive_util.py to archive_util.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_egg.py to bdist_egg.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install.py to install.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/egg_info.py to egg_info.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_lib.py to install_lib.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/alias.py to alias.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_rpm.py to bdist_rpm.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_scripts.py to install_scripts.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/rotate.py to rotate.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/build_py.py to build_py.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_egg_info.py to install_egg_info.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/test.py to test.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/setopt.py to setopt.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/develop.py to develop.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py to easy_install.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_wininst.py to bdist_wininst.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/register.py to register.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/upload_docs.py to upload_docs.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/build_ext.py to build_ext.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/sdist.py to sdist.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/saveopts.py to saveopts.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/version.py to version.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/script template.py to script template.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/py26compat.py to py26compat.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/py27compat.py to py27compat.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_dist_info.py to test_dist_info.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_build_ext.py to test_build_ext.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_resources.py to test_resources.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_svn.py to test_svn.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_markerlib.py to test_markerlib.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_sandbox.py to test_sandbox.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/doctest.py to doctest.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/py26compat.py to py26compat.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_sdist.py to test_sdist.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_packageindex.py to test_packageindex.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/environment.py to environment.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_upload_docs.py to test_upload_docs.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/script-with-bom.py to script-with-bom.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_easy_install.py to test_easy_install.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_develop.py to test_develop.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_test.py to test_test.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/server.py to server.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_egg_info.py to test_egg_info.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_bdist_egg.py to test_bdist_egg.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/py31compat.py to py31compat.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/svn_utils.py to svn_utils.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/lib2to3_ex.py to lib2to3_ex.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/depends.py to depends.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/site-patch.py to site-patch.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/sandbox.py to sandbox.pyc
byte-compiling build/bdist.linux-x86_64/egg/_markerlib/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/_markerlib/markers.py to markers.pyc
byte-compiling build/bdist.linux-x86_64/egg/easy_install.py to easy_install.pyc
byte-compiling build/bdist.linux-x86_64/egg/pkg_resources.py to pkg_resources.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/entry_points.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying setuptools.egg-info/zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO
creating dist
creating 'dist/setuptools-3.0.2-py2.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing setuptools-3.0.2-py2.7.egg
Removing /home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/setuptools-3.0.2-py2.7.egg
Copying setuptools-3.0.2-py2.7.egg to /home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages
Removing setuptools 5.2 from easy-install.pth file
Adding setuptools 3.0.2 to easy-install.pth file
Installing easy_install script to /home/snazarov/csachse-emspring-60a26857113a/bin
Installing easy_install-2.7 script to /home/snazarov/csachse-emspring-60a26857113a/bin
Installed /home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/setuptools-3.0.2-py2.7.egg
Processing dependencies for setuptools==3.0.2
Traceback (most recent call last):
File "setup.py", line 203, in <module>
dist = setuptools.setup(**setup_params)
File "/home/snazarov/csachse-emspring-60a26857113a/parts/EMAN2/Python/lib/python2.7/distutils/core.py", line 152, in setup
dist.run_commands()
File "/home/snazarov/csachse-emspring-60a26857113a/parts/EMAN2/Python/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/home/snazarov/csachse-emspring-60a26857113a/parts/EMAN2/Python/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/install.py", line 74, in run
self.do_egg_install()
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/install.py", line 97, in do_egg_install
cmd.run()
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/easy_install.py", line 358, in run
self.easy_install(spec, not self.no_deps)
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/easy_install.py", line 574, in easy_install
return self.install_item(None, spec, tmpdir, deps, True)
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/easy_install.py", line 625, in install_item
self.process_distribution(spec, dist, deps)
File "/tmp/tmppjjTiR/setuptools-3.0.2/setuptools/command/easy_install.py", line 671, in process_distribution
[requirement], self.local_index, self.easy_install
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 633, in resolve
requirements.extend(dist.requires(req.extras)[::-1])
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 2291, in requires
dm = self._dep_map
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 2277, in _dep_map
for extra,reqs in split_sections(self._get_metadata(name)):
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 2715, in split_sections
for line in yield_lines(s):
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 1989, in yield_lines
for ss in strs:
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 2305, in _get_metadata
for line in self.get_metadata_lines(name):
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 1369, in get_metadata_lines
return yield_lines(self.get_metadata(name))
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 1361, in get_metadata
return self._get(self._fn(self.egg_info,name))
File "/tmp/tmppjjTiR/setuptools-3.0.2/pkg_resources.py", line 1425, in _get
return self.loader.get_data(path)
zipimport.ZipImportError: bad local file header in /home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/setuptools-3.0.2-py2.7.egg
Something went wrong during the installation.
See the error message above.
Sergey Nazarov
PhD student
Laboratory of biophysics and structural biology
Swiss Federal Institute of Technology, Lausanne
Сергей Назаров
Jun 30, 2014, 12:32:09 PM6/30/14
to emsp...@googlegroups.com
Hi,
Thank you for the file, it works fine.
Now the error happened at the step 4 (Build).
I attached the build.log file.
Now the error is:
..........
make[5]: Entering directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi/contrib/vt/vt/vtlib'
CC libvt_la-vt_env.lo
CC libvt_la-vt_error.lo
CC libvt_la-vt_fbindings.lo
CC libvt_la-vt_otf_gen.lo
CC libvt_la-vt_otf_sum.lo
CC libvt_la-vt_pform_linux.lo
CC libvt_la-vt_thrd.lo
CC libvt_la-vt_trc.lo
CC libvt_la-vt_user_comment.lo
CC libvt_la-vt_user_control.lo
CC libvt_la-vt_user_count.lo
CC libvt_la-vt_user_marker.lo
CC libvt_la-vt_user_message.lo
CC libvt_la-vt_user_region.lo
CC libvt_la-vt_getcpu.lo
CC libvt_la-vt_plugin_cntr.lo
CC libvt_la-vt_rusage.lo
CC libvt_la-vt_fork.lo
CC libvt_la-vt_comp_gnu.lo
CC libvt_la-vt_execwrap.lo
CC libvt_la-vt_gpu.lo
CC libvt_la-vt_cudartwrap.lo
CC libvt_la-vt_cudart.lo
vt_cudart.c: In function 'cudaLaunch':
vt_cudart.c:2725:15: error: 'vt_cupti_events_enabled' undeclared (first use in this function)
vt_cudart.c:2725:15: note: each undeclared identifier is reported only once for each function it appears in
make[5]: *** [libvt_la-vt_cudart.lo] Error 1
make[5]: Leaving directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi/contrib/vt/vt/vtlib'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi/contrib/vt/vt'
make[3]: *** [all] Error 2
make[3]: Leaving directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi/contrib/vt/vt'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi/contrib/vt'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi'
make: *** [all-recursive] Error 1
openmpi: cmmi failed: /tmp/tmpof5S4Qbuildout-openmpi
While:
Installing openmpi.
An internal error occurred due to a bug in either zc.buildout or in a
recipe being used:
Thank you for the file, it works fine.
Now the error happened at the step 4 (Build).
I attached the build.log file.
Now the error is:
..........
make[5]: Entering directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi/contrib/vt/vt/vtlib'
CC libvt_la-vt_env.lo
CC libvt_la-vt_error.lo
CC libvt_la-vt_fbindings.lo
CC libvt_la-vt_otf_gen.lo
CC libvt_la-vt_otf_sum.lo
CC libvt_la-vt_pform_linux.lo
CC libvt_la-vt_thrd.lo
CC libvt_la-vt_trc.lo
CC libvt_la-vt_user_comment.lo
CC libvt_la-vt_user_control.lo
CC libvt_la-vt_user_count.lo
CC libvt_la-vt_user_marker.lo
CC libvt_la-vt_user_message.lo
CC libvt_la-vt_user_region.lo
CC libvt_la-vt_getcpu.lo
CC libvt_la-vt_plugin_cntr.lo
CC libvt_la-vt_rusage.lo
CC libvt_la-vt_fork.lo
CC libvt_la-vt_comp_gnu.lo
CC libvt_la-vt_execwrap.lo
CC libvt_la-vt_gpu.lo
CC libvt_la-vt_cudartwrap.lo
CC libvt_la-vt_cudart.lo
vt_cudart.c: In function 'cudaLaunch':
vt_cudart.c:2725:15: error: 'vt_cupti_events_enabled' undeclared (first use in this function)
vt_cudart.c:2725:15: note: each undeclared identifier is reported only once for each function it appears in
make[5]: *** [libvt_la-vt_cudart.lo] Error 1
make[5]: Leaving directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi/contrib/vt/vt/vtlib'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi/contrib/vt/vt'
make[3]: *** [all] Error 2
make[3]: Leaving directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi/contrib/vt/vt'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi/contrib/vt'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/tmp/tmpof5S4Qbuildout-openmpi/openmpi-1.6.5/ompi'
make: *** [all-recursive] Error 1
openmpi: cmmi failed: /tmp/tmpof5S4Qbuildout-openmpi
While:
Installing openmpi.
An internal error occurred due to a bug in either zc.buildout or in a
recipe being used:
Traceback (most recent call last):
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.buildout-2.2.1-py2.7.egg/zc/buildout/buildout.py", line 1942, in main
getattr(buildout, command)(args)
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.buildout-2.2.1-py2.7.egg/zc/buildout/buildout.py", line 622, in install
installed_files = self[part]._call(recipe.install)
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.buildout-2.2.1-py2.7.egg/zc/buildout/buildout.py", line 1366, in _call
return f()
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.recipe.cmmi-1.3.6-py2.7.egg/zc/recipe/cmmi/__init__.py", line 113, in install
self.build()
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.recipe.cmmi-1.3.6-py2.7.egg/zc/recipe/cmmi/__init__.py", line 196, in build
self.cmmi(dest)
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.recipe.cmmi-1.3.6-py2.7.egg/zc/recipe/cmmi/__init__.py", line 222, in cmmi
system("make")
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.recipe.cmmi-1.3.6-py2.7.egg/zc/recipe/cmmi/__init__.py", line 34, in system
raise SystemError("Failed", c)
SystemError: ('Failed', 'make')
getattr(buildout, command)(args)
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.buildout-2.2.1-py2.7.egg/zc/buildout/buildout.py", line 622, in install
installed_files = self[part]._call(recipe.install)
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.buildout-2.2.1-py2.7.egg/zc/buildout/buildout.py", line 1366, in _call
return f()
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.recipe.cmmi-1.3.6-py2.7.egg/zc/recipe/cmmi/__init__.py", line 113, in install
self.build()
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.recipe.cmmi-1.3.6-py2.7.egg/zc/recipe/cmmi/__init__.py", line 196, in build
self.cmmi(dest)
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.recipe.cmmi-1.3.6-py2.7.egg/zc/recipe/cmmi/__init__.py", line 222, in cmmi
system("make")
File "/home/snazarov/csachse-emspring-60a26857113a/lib/python2.7/site-packages/zc.recipe.cmmi-1.3.6-py2.7.egg/zc/recipe/cmmi/__init__.py", line 34, in system
raise SystemError("Failed", c)
SystemError: ('Failed', 'make')
Reply all
Reply to author
Forward
0 new messages