ImportError: dlopen(/usr/local/lib/python2.7/site-packages/pysam/libchtslib.so, 2): Symbol not found: _hfile_plugin_init_libcurl

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Roxanne Beinart

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Jun 30, 2016, 2:01:42 PM6/30/16
to EMIRGE users
Hello,
I installed Emirge successfully (no errors for build and for install) but am getting the below error when I try to run emirge (even if I just want to call the help info).

Any ideas?

Thanks!
-Roxanne-



$ ./emirge.py --help

Traceback (most recent call last):
  File "./emirge.py", line 54, in <module>
    import pysam
  File "/usr/local/lib/python2.7/site-packages/pysam/__init__.py", line 5, in <module>
    from pysam.libchtslib import *
ImportError: dlopen(/usr/local/lib/python2.7/site-packages/pysam/libchtslib.so, 2): Symbol not found: _hfile_plugin_init_libcurl
  Referenced from: /usr/local/lib/python2.7/site-packages/pysam/libchtslib.so
  Expected in: flat namespace
 in /usr/local/lib/python2.7/site-packages/pysam/libchtslib.so
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