Fwd: Failing!

[Paul Penczek]

Regards,

Pawel

Begin forwarded message:

From: paul penczek <pawe...@outlook.com>
Date: June 17, 2019 at 1:20:07 PM CDT
To: paul penczek <pawe...@outlook.com>
Subject: Failing!

Hi,

it fails on Mac due to a missing file, please see log file attached.

Regards,
____________________
Pawel A. Penczek, Ph.D.
Professor
Structural Biology Imaging Center, co-Director
The University of Texas
phone: 713-500-5416
fax: 713-500-0652
https://med.uth.edu/bmb/faculty/pawel-a-penczek/

Begin forwarded message:

From: "eman-bot (mac)" <eman....@gmail.com>

Subject: [JenkinsCI/Mac] (master - da6fd1e) #1900 - Still Failing!

Date: June 17, 2019 at 11:20:36 AM CDT

To: pawe...@att.net

GENERAL INFO

BUILD FAILURE
Build URL: http://10.10.10.214:8080/job/Mac/1900/
Project: Mac
Date of build: Mon, 17 Jun 2019 16:17:21 +0000
Build duration: 3 min 15 sec and counting


CHANGE SET

  Revision  by pawelpap: (t (<a href='https://github.com/cryoem/eman2.git/commit/da6fd1ea22faa13a631701f24f3fc66a58333dcc'>commit: da6fd1e</a>))

change: edit libEM/sparx/util_sparx.cpp




CONSOLE OUTPUT

[...truncated 2045 lines...]

[2019-06-17T16:20:34.376Z] test transform projection use .................... ... ok

[2019-06-17T16:20:34.376Z] test Dict class .................................. ... ok

[2019-06-17T16:20:34.376Z] test None as EMObject ............................ ... ok

[2019-06-17T16:20:34.376Z] test point and Size class ........................ ... ok

[2019-06-17T16:20:34.376Z] test em2numpy .................................... ... ok

[2019-06-17T16:20:34.376Z] test em2numpy again .............................. ... ok

[2019-06-17T16:20:34.376Z] test emobject .................................... ... ok

[2019-06-17T16:20:34.376Z] test emobject to Python type ..................... ... ok

[2019-06-17T16:20:34.376Z] test map ......................................... ... ok

[2019-06-17T16:20:34.376Z] test numpy2em .................................... ... ok

[2019-06-17T16:20:34.376Z] test numpy2em for float64 ........................ ... ok

[2019-06-17T16:20:34.376Z] test vector and point size ....................... ... ok

[2019-06-17T16:20:34.376Z] test vector ...................................... ... ok

[2019-06-17T16:20:34.376Z] test get_all_attributes function ................. ... ok

[2019-06-17T16:20:34.376Z] test get_datatype_string function ................ ... ok

[2019-06-17T16:20:34.376Z] test get_euler_names ............................. ... ok

[2019-06-17T16:20:34.645Z] test get_image_count function .................... ... ok

[2019-06-17T16:20:34.645Z] test get_image_ext_type function ................. ... ok

[2019-06-17T16:20:34.645Z] test get_image_type function ..................... ... ok

[2019-06-17T16:20:34.645Z] test get_imagetype_name function ................. ... ok

[2019-06-17T16:20:34.645Z] test is_complex_type function .................... ... ok

[2019-06-17T16:20:34.645Z] test is_same_ctf function ........................ ... ok

[2019-06-17T16:20:34.645Z] test is_same_size function ....................... ... ok

[2019-06-17T16:20:34.645Z] test read/write single attribute from/to HDF5 file ... ok

[2019-06-17T16:20:34.645Z] test agauss() function ........................... ... ok

[2019-06-17T16:20:34.645Z] test angle_sub_2pi() function .................... ... ok

[2019-06-17T16:20:34.645Z] test angle_sub_pi() function ..................... ... ok

[2019-06-17T16:20:34.645Z] test bilinear_interpolate() function ............. ... ok

[2019-06-17T16:20:34.645Z] test calc_best_fft_size() funciton ............... ... ok

[2019-06-17T16:20:34.645Z] test change_filename_ext() function .............. ... ok

[2019-06-17T16:20:34.645Z] test eman_copysign() function .................... ... ok

[2019-06-17T16:20:34.645Z] test eman_erfc() function ........................ ... ok

[2019-06-17T16:20:34.645Z] test fast_floor() function ....................... ... ok

[2019-06-17T16:20:34.645Z] test get_filename_ext() function ................. ... ok

[2019-06-17T16:20:34.645Z] test get_frand() function ........................ ... ok

[2019-06-17T16:20:34.645Z] test get_gauss_rand() function ................... ... ok

[2019-06-17T16:20:34.645Z] test get_time_label() function ................... ... ok

[2019-06-17T16:20:34.645Z] test hypot3() function ........................... ... ok

[2019-06-17T16:20:34.645Z] test int2str() function .......................... ... ok

[2019-06-17T16:20:34.645Z] test is_file_exist() function .................... ... ok

[2019-06-17T16:20:34.645Z] test max() function .............................. ... ok

[2019-06-17T16:20:34.645Z] test min() function .............................. ... ok

[2019-06-17T16:20:34.645Z] test remove_filename_ext() function .............. ... ok

[2019-06-17T16:20:34.645Z] test round() function ............................ ... ok

[2019-06-17T16:20:34.645Z] test sbasename() function ........................ ... ok

[2019-06-17T16:20:34.645Z] test the set_randnum_seed() function ............. ... ok

[2019-06-17T16:20:34.645Z] test square() function ........................... ... ok

[2019-06-17T16:20:34.645Z] test square_sum() function ....................... ... ok

[2019-06-17T16:20:34.645Z] test sstrcmp() function .......................... ... ok

[2019-06-17T16:20:34.645Z] test trilinear_interpolate() function ............ ... ok

[2019-06-17T16:20:34.645Z] test as_list() function .......................... ... ok

[2019-06-17T16:20:34.645Z] test c++ vector to Python list ................... ... ok

[2019-06-17T16:20:34.645Z] test supply Pyhton list/tuple as c++ vector ...... ... ok

[2019-06-17T16:20:34.645Z] test integer vector functions .................... ... ok

[2019-06-17T16:20:34.645Z] test float vector functions ...................... ... ok

[2019-06-17T16:20:34.645Z] test vector transform operation .................. ... ok

[2019-06-17T16:20:34.645Z] test get_size() function ......................... ... ok

[2019-06-17T16:20:34.645Z] test get_x() function ............................ ... ok

[2019-06-17T16:20:34.645Z] test get_xlist() function ........................ ... ok

[2019-06-17T16:20:34.645Z] test XYData.Pair class ........................... ... ok

[2019-06-17T16:20:34.645Z] test read/write file ............................. ... ok

[2019-06-17T16:20:34.645Z]

[2019-06-17T16:20:34.645Z] ======================================================================

[2019-06-17T16:20:34.645Z] ERROR: test ignore negative index for jpeg ..............

[2019-06-17T16:20:34.645Z] ----------------------------------------------------------------------

[2019-06-17T16:20:34.645Z] Traceback (most recent call last):

[2019-06-17T16:20:34.645Z]   File "/Users/eman/macosx-slave/workspace/Mac/rt/pyem/test_imageio.py", line 207, in test_write_jpeg

[2019-06-17T16:20:34.645Z]     os.unlink(filename)

[2019-06-17T16:20:34.645Z] OSError: [Errno 2] No such file or directory: 'testimage.jpeg'

[2019-06-17T16:20:34.645Z]

[2019-06-17T16:20:34.645Z] ----------------------------------------------------------------------

[2019-06-17T16:20:34.645Z] Ran 367 tests in 15.843s

[2019-06-17T16:20:34.645Z]

[2019-06-17T16:20:34.645Z] FAILED (errors=1)

[Pipeline] }

[Pipeline] // stage

[Pipeline] stage

[Pipeline] { (build-recipe)

Stage "build-recipe" skipped due to earlier failure(s)

[Pipeline] }

[Pipeline] // stage

[Pipeline] stage

[Pipeline] { (package)

Stage "package" skipped due to earlier failure(s)

[Pipeline] }

[Pipeline] // stage

[Pipeline] stage

[Pipeline] { (test-package)

Stage "test-package" skipped due to earlier failure(s)

[Pipeline] }

[Pipeline] // stage

[Pipeline] stage

[Pipeline] { (deploy)

Stage "deploy" skipped due to earlier failure(s)

[Pipeline] }

[Pipeline] // stage

[Pipeline] stage

[Pipeline] { (Declarative: Post Actions)

[Pipeline] emailext

[shadow walker]

The failing test was disabled and a todo item was files under GitHub issues, https://github.com/cryoem/eman2/issues/399.

--
You received this message because you are subscribed to the Google Groups "EMAN2 and SPARX Development" group.
To unsubscribe from this group and stop receiving emails from it, send an email to eman2-develope...@googlegroups.com.
To post to this group, send email to eman2-de...@googlegroups.com.
Visit this group at https://groups.google.com/group/eman2-developers.
To view this discussion on the web visit https://groups.google.com/d/msgid/eman2-developers/CC50E464-5118-457A-8A08-212104F4A19E%40att.net.
For more options, visit https://groups.google.com/d/optout.

--
You received this message because you are subscribed to the Google Groups "EMAN2 and SPARX Development" group.
To unsubscribe from this group and stop receiving emails from it, send an email to eman2-develope...@googlegroups.com.
To post to this group, send email to eman2-de...@googlegroups.com.
Visit this group at https://groups.google.com/group/eman2-developers.
To view this discussion on the web visit https://groups.google.com/d/msgid/eman2-developers/CC50E464-5118-457A-8A08-212104F4A19E%40att.net.
For more options, visit https://groups.google.com/d/optout.

--

shadow_walker