Hi,
the reason why anonymous individuals are ignored by ELK is that they
are not in the OWL 2 EL profile:
http://www.w3.org/TR/owl2-profiles/#OWL_2_EL_2
I am not really sure what would be the problem had they been included.
I am not familiar very well with the semantics of anonymous
individuals in OWL and how is it related/different from the semantics
of black nodes in RDF.
The rest depends on what exactly you want to achieve in your migration
and how important the blank nodes for you. The simplest workaround
would be to replace all anonymous individuals with ordinary
individuals, e.g., replace "_:genid-nodeid-A298" with
"a:genid-nodeid-A298", where "a" is some new declared prefix. But I
do not know which side effects for your data this can cause.
Best regards,
Yevgeny
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