The rat's nest wires are "virtual" connections using a wire in Electric called the "unrouted" wire. Routing tools replace them with real wires.
I can't comment on the rotated cell, but much depends on which
placement algorithm you use, and there are many, so I'd need more
information about how you got this design. But also, why is it
wrong to rotate a circuit on its side?
-Steven Rubin
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