Elastix compile on Linux

[Zhehao Zhang]

Dear all,

I'm compiling Elastix with CMake on Linux. I have first successfully compile ITK-5.1.1 with option:

ITK_USE_64BITS_IDS = ON

ITK_LEGACY_REMOVE=ON

ITK_WRAP_PYTHON = ON

Module_ITKReview = ON

Module_RTK = ON

RTK_USE_CUDA = ON.

Then I try to compile Elastix with option:

CMAKE_BUILD_TYPE = Release

ELASTIX_USE_OPENCL = OFF

However, I got following error after I call make order:

[ 70%] Linking CXX executable ../bin/elastix
/usr/bin/ld: cannot find -lITKCudaCommon
collect2: error: ld returned 1 exit status
make[2]: *** [Core/CMakeFiles/elastix_exe.dir/build.make:405: bin/elastix] Error 1
make[1]: *** [CMakeFiles/Makefile2:4615: Core/CMakeFiles/elastix_exe.dir/all] Error 2
make: *** [Makefile:146: all] Error 2

I have GPU on my server and cuda/11.0 is installed. I am wondering is there some conflicts between my ITK/RTK compile and Elastix compile? 

If someone knows what's happening here,  could you please give me some ideas to solve this problem? Appreciate for any help.

Best,

Zhehao

[m.st...@lumc.nl]

Dear Zhehao,

Could you try with an itk version with

Module_RTK = OFF

RTK_USE_CUDA = OFF

and I believe he ITKReview module is also not needed for elastix.

Best, Marius

---

From: elastix-imag...@googlegroups.com <elastix-imag...@googlegroups.com> on behalf of Zhehao Zhang <zhehao.z...@gmail.com>
Sent: 27 January 2022 6:49 PM
To: elastix-imageregistration
Subject: [elastix-imageregistration] Elastix compile on Linux

 

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[Zhehao Zhang]

Hi Marius,

Thanks for your reply. After I compiled with another ITK version with 

Module_RTK = OFF

RTK_USE_CUDA = OFF

ITK_WRAP_PYTHON = OFF,

Elastix can also be successfully compiled.

So this seems a resonable way for me to keep two different ITK versions.

But if you know how to use only one ITK compile (with RTK, RTK-Cuda and Python Wrapping) to compile Elastix, I would love to also have a try.

Best,

Zhehao