To compile javascript and css outside of the update script run the following commands:
sudo -H -u edxapp bash
source /edx/app/edxapp/edxapp_env
cd /edx/app/edxapp/edx-platform
paver update_assets cms --settings=aws
paver update_assets lms --settings=aws
Suggest issuing the following to debug issues with r.js optimizer issues
python manage.py cms --settings=aws collectstatic --noinput
python manage.py lms --settings=aws collectstatic --noinput
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python manage.py cms --settings=aws collectstatic --noinput
python manage.py lms --settings=aws collectstatic --noinput
paver update_assets cms --settings=aws
paver update_assets lms --settings=aws