Processing large input files in a cluster environment - can you split FASTQ files?
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Matthew Oldach
Jun 10, 2020, 5:53:01 PM6/10/20
to Edwards Lab Tools
I'm trying to get some clarification on the README section #4 **Processing large input files in a cluster environment**.
This section mentions a Perl script to split the input for the DBs (FASTA) files but mentions nothing about the other input - raw reads (FASTQ) files.
Is it acceptable to use a tool such as fastqsplitter to split FASTQ file then run deconseq on the many parts then concatenate the output files?
This section mentions a Perl script to split the input for the DBs (FASTA) files but mentions nothing about the other input - raw reads (FASTQ) files.
Is it acceptable to use a tool such as fastqsplitter to split FASTQ file then run deconseq on the many parts then concatenate the output files?
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