greengenes database for Ribopicker standalone

[hha...@gmail.com]

Hello,

I am in the process for formatting databases so that I can use Ribopicker on my cluster.

The greengenes database has been updated since the manual was written and I can't work out which of the available databases on their new site is the correct one http://greengenes.secondgenome.com/

The manual says "greengenes16SrRNAgenes.txt" which doesn't give much clue for the format though now the site lists many different formats including fasta and aligned.

Please advise which input type I need for the perl formatting and bwa64.
Thanks!
Helen

[aline...@univ-lyon1.fr]

Hello,
I have the same problem and cannot format the green genes database. Any news on that problem ?
Thanks :)

Aline